SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000974
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr2:85523240-85540872
Size: 17632
Super-enhancer rank 974
Number of SE elements: 2
ChIP density(Case|Control): 13567.824|2427.9264
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PARTICL ;
ROSE Overlap PARTICL ; MAT2A ;
ROSE Proximal VAMP8 ; GGCX ; VAMP5 ;
ROSE Closest PARTICL ;
Lasso ;
PreSTIGE ;
ABC ;
BETA VAMP5 ; USP39 ; TMEM150A ; SH2D6 ; MAT2A ; RNF181 ; VAMP8 ; LOC100630918 ; C2orf68 ; GGCX ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000974 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers