SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000887
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr16:2022812-2040950
Size: 18138
Super-enhancer rank 887
Number of SE elements: 2
ChIP density(Case|Control): 13456.5822|1763.0136
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SLC9A3R2 ;
ROSE Overlap NTHL1 ; SLC9A3R2 ;
ROSE Proximal GFER ; SYNGR3 ; TSC2 ; SLC9A3R2 ; MIR1225 ; NOXO1 ; ZNF598 ; NPW ;
ROSE Closest SLC9A3R2 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA NOXO1 ; TBL3 ; TSC2 ; RNF151 ; SYNGR3 ; SLC9A3R2 ; SNHG9 ; GFER ; RPS2 ; RPL3L ; MIR6511B1 ; NTHL1 ; NPW ; MIR1225 ; SNORA64 ; SNORA10 ; MSRB1 ; MIR6511B2 ; SNORA78 ; ZNF598 ; NDUFB10 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000887 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers