SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000851
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr17:19161840-19216123
Size: 54283
Super-enhancer rank 851
Number of SE elements: 8
ChIP density(Case|Control): 17565.9788|5580.2924
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SNORD3A ;
ROSE Overlap SNORD3C ; SNORD3A ;
ROSE Proximal GRAPL ; EPN2 ; SNORD3D ;
ROSE Closest SNORD3A ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SNORD3D ; EPN2 ; LOC79999 ; LOC388436 ; SNORD3A ; GRAPL ; SNORD3C ; EPN2-IT1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000851 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers