SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000823
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr3:52043608-52090815
Size: 47207
Super-enhancer rank 823
Number of SE elements: 10
ChIP density(Case|Control): 16390.2704|4168.3781
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: DUSP7 ;
ROSE Overlap POC1A ; DUSP7 ; LINC00696 ;
ROSE Proximal RPL29 ;
ROSE Closest LINC00696 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ABHD14B ; RPL29 ; ACY1 ; POC1A ; PCBP4 ; ABHD14A ; DUSP7 ; ABHD14A-ACY1 ; LINC00696 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000823 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers