SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000699
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr11:118908237-118934307
Size: 26070
Super-enhancer rank 699
Number of SE elements: 12
ChIP density(Case|Control): 16072.155|2607
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: BCL9L ;
ROSE Overlap BCL9L ; MIR4492 ;
ROSE Proximal CXCR5 ; UPK2 ; FOXR1 ;
ROSE Closest BCL9L ;
Lasso ;
PreSTIGE ;
ABC ;
BETA CCDC84 ; CXCR5 ; TRAPPC4 ; RPL23AP64 ; FOXR1 ; UPK2 ; MIR3656 ; MIR4492 ; RPS25 ; BCL9L ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000699 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers