SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_156000698
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr17:40057853-40076159
Size: 18306
Super-enhancer rank 698
Number of SE elements: 5
ChIP density(Case|Control): 15660.783|2167.4304
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: THRA ;
ROSE Overlap THRA ;
ROSE Proximal CSF3 ; NR1D1 ; MSL1 ; MIR6884 ; MED24 ; SNORD124 ; THRA ;
ROSE Closest THRA ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MSL1 ; MED24 ; THRA ; CSF3 ; PSMD3 ; MIR6884 ; CASC3 ; SNORD124 ; NR1D1 ; MIR6866 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000698 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers