SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000611
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr9:127960087-127981954
Size: 21867
Super-enhancer rank 611
Number of SE elements: 5
ChIP density(Case|Control): 16988.4723|2451.2907
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: FAM102A ;
ROSE Overlap FAM102A ;
ROSE Proximal ST6GALNAC4 ; PIP5KL1 ; DPM2 ; FAM102A ;
ROSE Closest FAM102A ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ST6GALNAC6 ; NAIF1 ; DPM2 ; FAM102A ; ST6GALNAC4 ; PIP5KL1 ; SLC25A25 ; AK1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000611 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers