SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000473
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr19:13014627-13028722
Size: 14095
Super-enhancer rank 473
Number of SE elements: 1
ChIP density(Case|Control): 18884.481|1842.2165
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NFIX ;
ROSE Overlap NFIX ;
ROSE Proximal DAND5 ;
ROSE Closest NFIX ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TRMT1 ; GADD45GIP1 ; NFIX ; DAND5 ; FARSA ; RAD23A ; LYL1 ; MIR6515 ; NACC1 ; CALR ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000473 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers