SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000461
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr12:57085027-57113107
Size: 28080
Super-enhancer rank 461
Number of SE elements: 6
ChIP density(Case|Control): 20138.976|2878.2
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NAB2 ;
ROSE Overlap NAB2 ; STAT6 ;
ROSE Proximal LRP1 ; LRP1-AS ; STAT6 ; NEMP1 ; MYO1A ;
ROSE Closest NAB2 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA STAT6 ; NAB2 ; MYO1A ; ZBTB39 ; TMEM194A ; TAC3 ; MIR1228 ; LRP1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000461 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers