SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000458
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr1:156655787-156678666
Size: 22879
Super-enhancer rank 458
Number of SE elements: 5
ChIP density(Case|Control): 20014.5492|2715.7373
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NES ;
ROSE Overlap BCAN ; NES ;
ROSE Proximal CRABP2 ; RRNAD1 ; ISG20L2 ; BCAN ; HAPLN2 ;
ROSE Closest NES ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RRNAD1 ; GPATCH4 ; MRPL24 ; HDGF ; BCAN ; APOA1BP ; CRABP2 ; ISG20L2 ; HAPLN2 ; IQGAP3 ; NES ; TTC24 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000458 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers