SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000338
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr12:93375596-93385100
Size: 9504
Super-enhancer rank 338
Number of SE elements: 1
ChIP density(Case|Control): 21379.248|1688.8608
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NUDT4 ;
ROSE Overlap NUDT4 ; LOC643339 ;
ROSE Proximal NUDT4 ;
ROSE Closest NUDT4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MRPL42 ; NUDT4 ; LOC643339 ; UBE2N ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000338 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers