SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000269
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr1:16888777-16915433
Size: 26656
Super-enhancer rank 269
Number of SE elements: 5
ChIP density(Case|Control): 26642.672|5016.6592
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CROCC ;
ROSE Overlap RNVU1-18 ;
ROSE Proximal CROCC ;
ROSE Closest CROCC ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RNU1-4 ; MFAP2 ; RNU1-28P ; MIR3675 ; RNU1-3 ; RNVU1-18 ; RNU1-2 ; RNU1-27P ; CROCC ; RNU1-1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000269 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers