SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000261
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr19:5925314-5969119
Size: 43805
Super-enhancer rank 261
Number of SE elements: 11
ChIP density(Case|Control): 27347.4615|5331.0685
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RANBP3 ;
ROSE Overlap RANBP3 ;
ROSE Proximal VMAC ; NDUFA11 ; LOC100128568 ; CAPS ;
ROSE Closest RANBP3 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA FUT3 ; CAPS ; RANBP3 ; VMAC ; FUT5 ; NDUFA11 ; LOC101928844 ; LOC100128568 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000261 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers