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Super-enhancer overview

SE ID: SE_02_156000227
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr12:54350505-54361337
Size: 10832
Super-enhancer rank 227
Number of SE elements: 1
ChIP density(Case|Control): 24833.4432|1564.1408
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LOC102724050 ;
ROSE Overlap LOC102724050 ; COPZ1 ;
ROSE Proximal COPZ1 ; GPR84 ; ZNF385A ; NFE2 ; MIR148B ;
ROSE Closest LOC102724050 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA CBX5 ; ITGA5 ; COPZ1 ; ZNF385A ; NFE2 ; LOC102724050 ; HNRNPA1 ; MIR148B ; GPR84 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000227 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers