SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000208
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr19:12777296-12796562
Size: 19266
Super-enhancer rank 208
Number of SE elements: 4
ChIP density(Case|Control): 26644.878|2670.2676
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIR5684 ;
ROSE Overlap JUNB ; MIR5684 ;
ROSE Proximal BEST2 ; RTBDN ; ASNA1 ; HOOK2 ; RNASEH2A ; PRDX2 ; C19orf43 ; MAST1 ;
ROSE Closest MIR5684 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RTBDN ; RNASEH2A ; MIR6794 ; TNPO2 ; C19orf43 ; FBXW9 ; PRDX2 ; MIR5684 ; HOOK2 ; MAST1 ; SNORD41 ; DNASE2 ; JUNB ; BEST2 ; ASNA1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000208 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers