SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000173
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr17:40091537-40124925
Size: 33388
Super-enhancer rank 173
Number of SE elements: 6
ChIP density(Case|Control): 30600.102|4203.5492
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NR1D1 ;
ROSE Overlap THRA ; NR1D1 ; MSL1 ;
ROSE Proximal MIR6866 ; MED24 ; CASC3 ; THRA ;
ROSE Closest NR1D1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MSL1 ; MED24 ; THRA ; CSF3 ; RAPGEFL1 ; MIR6867 ; MIR6884 ; CASC3 ; SNORD124 ; NR1D1 ; MIR6866 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000173 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers