SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_156000132
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr12:12704199-12750387
Size: 46188
Super-enhancer rank 132
Number of SE elements: 8
ChIP density(Case|Control): 36229.8672|6078.3408
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: APOLD1 ;
ROSE Overlap CDKN1B ; APOLD1 ;
ROSE Proximal MIR613 ; APOLD1 ; GPR19 ;
ROSE Closest APOLD1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MIR613 ; DDX47 ; APOLD1 ; CDKN1B ; GPR19 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000132 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers