SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000063
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr4:9968250-10076244
Size: 107994
Super-enhancer rank 63
Number of SE elements: 33
ChIP density(Case|Control): 54158.991|13358.8578
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ;
ROSE Overlap SLC2A9 ; WDR1 ;
ROSE Proximal MIR3138 ;
ROSE Closest SLC2A9 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA WDR1 ; SLC2A9 ; MIR3138 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000063 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers