SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000056
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr17:2156587-2244984
Size: 88397
Super-enhancer rank 56
Number of SE elements: 21
ChIP density(Case|Control): 54125.4831|11986.6332
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LOC101927839 ;
ROSE Overlap LOC101927839 ; SMG6 ;
ROSE Proximal ;
ROSE Closest LOC101927839 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SMG6 ; LOC101927839 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000056 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers