SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000025
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr2:26668334-26745727
Size: 77393
Super-enhancer rank 25
Number of SE elements: 18
ChIP density(Case|Control): 67115.2096|9155.5919
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: KCNK3 ;
ROSE Overlap KCNK3 ;
ROSE Proximal SLC35F6 ; CENPA ; CIB4 ;
ROSE Closest KCNK3 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SLC35F6 ; CIB4 ; KCNK3 ; CENPA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000025 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers