SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000008
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr17:48561218-48599027
Size: 37809
Super-enhancer rank 8
Number of SE elements: 1
ChIP density(Case|Control): 84631.6656|5217.642
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIR10A ;
ROSE Overlap HOXB6 ; HOXB5 ; HOXB-AS3 ; MIR10A ; HOXB3 ; HOXB4 ;
ROSE Proximal HOXB1 ; HOXB2 ; HOXB7 ; HOXB9 ; HOXB8 ; HOXB-AS1 ; MIR196A1 ;
ROSE Closest MIR10A ;
Lasso ;
PreSTIGE ;
ABC ;
BETA HOXB3 ; HOXB-AS3 ; HOXB-AS1 ; HOXB5 ; MIR196A1 ; HOXB9 ; MIR10A ; HOXB8 ; HOXB7 ; HOXB6 ; HOXB4 ; HOXB2 ; HOXB1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000008 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers