SEdb 2.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_143500001
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Stem cell
Tissue type: Trophoblast
Biosample name: trophoblast stem cells_MSX2_KD
Genomic region: chr19:53580496-53659370
Size: 78874
Super-enhancer rank 1
Number of SE elements: 7
ChIP density(Case|Control): 93828.5104|10537.5664
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: DPRX;
ROSE Overlap DPRX; LOC284379;
ROSE Proximal MIR520A; MIR519E; MIR519C; MIR526A1; MIR523; ZNF331; MIR520F; MIR515-1; MIR1323; MIR1283-1; MIR518B; MIR525; MIR519B; MIR518F; MIR512-2; MIR520E; MIR512-1; MIR526B; MIR498; MIR520C; MIR520B; MIR518C;
ROSE Closest DPRX;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_143500001 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers