SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_108800291
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: T47D_shCtrl_45min
Genomic region: chr20:35739322-35744831
Size: 5509
Super-enhancer rank 291
Number of SE elements: 2
ChIP density(Case|Control): 41262.9609|727.188
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RBM39 ;
ROSE Overlap RBM39 ;
ROSE Proximal PHF20 ; RBM39 ; ROMO1 ; NFS1 ;
ROSE Closest RBM39 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RBM12 ; ROMO1 ; RBM39 ; CPNE1 ; NFS1 ; PHF20 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_108800291 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers