SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_102800403
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Blood
Biosample name: HL-60_WT
Genomic region: chr1:44723695-44725837
Size: 2142
Super-enhancer rank 403
Number of SE elements: 1
ChIP density(Case|Control): 13132.602|258.7536
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RNU5F-1 ;
ROSE Overlap C1orf228 ;
ROSE Proximal TMEM53 ; RNU5D-1 ; RPS8 ; KIF2C ; RNU5F-1 ;
ROSE Closest RNU5F-1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SNORD55 ; TMEM53 ; KIF2C ; RNU5D-1 ; C1orf228 ; SNORD46 ; SNORD38B ; SNORD38A ; RNU5F-1 ; BEST4 ; BTBD19 ; TCTEX1D4 ; RPS8 ; PLK3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_102800403 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers