SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_092900416
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Mid-gestation placenta
Biosample name: trophoblast__CytT
Genomic region: chr6:159696302-159745019
Size: 48717
Super-enhancer rank 416
Number of SE elements: 13
ChIP density(Case|Control): 25907.7006|4564.7829
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: WTAP ;
ROSE Overlap WTAP ;
ROSE Proximal ACAT2 ; TCP1 ; SOD2 ; MRPL18 ; LOC100129518 ; SNORA20 ; SNORA29 ;
ROSE Closest WTAP ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ACAT2 ; PNLDC1 ; SOD2 ; LOC100129518 ; TCP1 ; SNORA29 ; WTAP ; MRPL18 ; SNORA20 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_092900416 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers