SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_075600287
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Embryo
Biosample name: ES-derived progenitors_FG FOXA2 -/-
Genomic region: chr3:50123778-50167209
Size: 43431
Super-enhancer rank 287
Number of SE elements: 14
ChIP density(Case|Control): 26340.9015|2145.4914
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SEMA3F ;
ROSE Overlap SEMA3F ;
ROSE Proximal GNAT1 ; RBM5 ; RBM5-AS1 ; SLC38A3 ; MIR566 ;
ROSE Closest SEMA3F ;
Lasso ;
PreSTIGE ;
ABC ;
BETA GNAI2 ; RBM5-AS1 ; GNAT1 ; RBM5 ; MIR566 ; SLC38A3 ; SEMA3F ; MIR5787 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_075600287 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers