SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200478
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr1:32753932-32798871
Size: 44939
Super-enhancer rank 478
Number of SE elements: 10
ChIP density(Case|Control): 31596.6109|7693.5568
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: KIAA1522 ;
ROSE Overlap KIAA1522 ; YARS ;
ROSE Proximal S100PBP ; KIAA1522 ;
ROSE Closest KIAA1522 ;
Lasso ;
PreSTIGE ;
ABC HDAC1 ;
BETA YARS ; KIAA1522 ; FNDC5 ; S100PBP ; SYNC ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200478 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers