SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200463
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr1:181077639-181119895
Size: 42256
Super-enhancer rank 463
Number of SE elements: 9
ChIP density(Case|Control): 34379.4816|10120.312
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: IER5 ;
ROSE Overlap IER5 ;
ROSE Proximal MR1 ;
ROSE Closest IER5 ;
Lasso ;
PreSTIGE ;
ABC IER5 ; ACBD6 ; LHX4 ; QSOX1 ; CEP350 ; TOR1AIP1 ; TDRD5 ; AXDND1 ; ABL2 ; XPR1 ; KIAA1614-AS1 ; NPL ; LINC01686 ; RGS16 ; RNASEL ; LINC00272 ; TEDDM1 ; GLUL ; LINC01344 ; MR1 ; STX6 ;
BETA MR1 ; LOC101928973 ; STX6 ; IER5 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200463 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers