SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_060200023
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr20:19901458-19995461
Size: 94003
Super-enhancer rank 23
Number of SE elements: 15
ChIP density(Case|Control): 96888.8921|18339.9853
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RIN2 ;
ROSE Overlap RIN2 ;
ROSE Proximal NAA20 ;
ROSE Closest RIN2 ;
Lasso ;
PreSTIGE ;
ABC RIN2 ; CFAP61 ; NAA20 ; LOC100130264 ; DTD1 ; SEC23B ; LOC100270804 ; SMIM26 ; LINC00652 ; POLR3F ; LINC00493 ; KIZ ; RALGAPA2 ; DZANK1 ; XRN2 ; RBBP9 ; ZNF133 ; PET117 ; OVOL2 ;
BETA NAA20 ; RIN2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200023 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers