SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700430
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr12:6322865-6346674
Size: 23809
Super-enhancer rank 430
Number of SE elements: 3
ChIP density(Case|Control): 55303.5452|1804.7222
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TNFRSF1A ;
ROSE Overlap PLEKHG6 ; TNFRSF1A ;
ROSE Proximal SCNN1A ; LTBR ;
ROSE Closest TNFRSF1A ;
Lasso ;
PreSTIGE ;
ABC CD9 ;
BETA SCNN1A ; PLEKHG6 ; LTBR ; TNFRSF1A ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700430 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers