SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_042700187
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr18:21299288-21334660
Size: 35372
Super-enhancer rank 187
Number of SE elements: 5
ChIP density(Case|Control): 93951.5692|3431.084
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GREB1L ;
ROSE Overlap GREB1L ;
ROSE Proximal ;
ROSE Closest GREB1L ;
Lasso ;
PreSTIGE ;
ABC TTC39C-AS1 ; LAMA3 ; CABYR ; ANKRD29 ; TMEM241 ; C18orf8 ; NPC1 ;
BETA GREB1L ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700187 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers