SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700131
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr15:67023654-67128940
Size: 105286
Super-enhancer rank 131
Number of SE elements: 12
ChIP density(Case|Control): 124616.5096|14182.0242
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SMAD3 ;
ROSE Overlap SMAD3 ;
ROSE Proximal SMAD3 ;
ROSE Closest SMAD3 ;
Lasso ;
PreSTIGE ;
ABC SMAD6 ;
BETA SMAD3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700131 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers