Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000281398
Gene: SNHG4 Gene type: lncRNA
Strand: + External links:
Genomic region: chr5:139274102-139284899 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_048800550 chr5:139261590-139262545 Sample_02_0488 Bone marrow HSCe_74y_CD34+,CD38-,Lineage- 550 1 21 0 0 1 0 MATR3,SNHG4,SNORA74A
SE_02_075501382 chr5:139280081-139286079 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 1382 1 126 6 1 6 92 MATR3,SNHG4,SNORA74A
SE_02_074600358 chr5:139282885-139337391 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 358 14 1276 56 3 239 1362 MATR3,SNHG4,PAIP2,SLC23A1,SNORA74A
SE_02_077500357 chr5:139288559-139300958 Sample_02_0775 Pancreas EndoC-BH1_SE 357 2 276 9 1 26 268 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_055500818 chr5:139292358-139300949 Sample_02_0555 Other HAP1_WT 818 3 200 6 1 26 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_061700912 chr5:139292446-139309526 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 912 5 368 14 1 117 323 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_138200558 chr5:139292578-139296245 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 558 1 86 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_085600370 chr5:139292762-139295974 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 370 1 78 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_101701693 chr5:139292806-139296081 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1693 1 81 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_068300410 chr5:139292836-139316661 Sample_02_0683 Lung DMS114 410 10 528 18 1 147 741 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_143100719 chr5:139292996-139297274 Sample_02_1431 Blood T cell 719 1 104 4 1 26 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_081701009 chr5:139293076-139297019 Sample_02_0817 Ovary Epithelial ovarian cancer 1009 2 96 4 1 26 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_158401455 chr5:139293096-139295840 Sample_02_1584 Brain U87 GBM_Mock 1455 1 69 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_083901190 chr5:139293122-139295793 Sample_02_0839 Embryo hNPCs_K755R/+ 1190 1 68 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_064600613 chr5:139293129-139296117 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 613 1 75 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_064500884 chr5:139293141-139296078 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 884 1 74 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_068500221 chr5:139293148-139296089 Sample_02_0685 Lung NCI-H1048_no infection 221 2 74 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_093700860 chr5:139293226-139316091 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 860 7 504 18 1 143 700 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_065000430 chr5:139293278-139296032 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 430 1 69 2 0 25 201 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_072100871 chr5:139296290-139315295 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 871 8 410 16 1 110 455 MATR3,PAIP2,SNORA74A,SNHG4

Genomic distribution of SEs associated with SNHG4

The strength of the tissue affected by the gene


Expression of SNHG4