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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000187838
Gene: PLSCR3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:7389727-7394842 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_039600250 chr17:7341555-7367512 Sample_02_0396 Skin NHEK-D 250 8 745 44 1 199 2836 ACAP1,TMEM95,KCTD11,GPS2,PLSCR3,YBX2,EIF5A,TNK1,C17ORF61,NLGN2,NEURL4
SE_02_103200624 chr17:7342675-7371394 Sample_02_1032 Head and neck SCC1 JQ1 624 8 823 49 1 198 2637 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,SPEM1,NLGN2,NEURL4,PLSCR3,TNK1,YBX2
SE_02_074700756 chr17:7342940-7353570 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 756 5 259 12 1 139 1816 ACAP1,KCTD11,EIF5A,GPS2,NEURL4,TMEM95,PLSCR3,TNK1,YBX2
SE_02_087400520 chr17:7346829-7361313 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 520 3 404 20 1 164 2186 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_02_103000637 chr17:7346868-7357226 Sample_02_1030 Colon DKO 637 8 282 13 1 160 2147 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,PLSCR3,TNK1
SE_02_074600800 chr17:7347085-7352949 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 800 3 145 7 1 91 1125 ACAP1,KCTD11,EIF5A,GPS2,NEURL4,TMEM95,PLSCR3,TNK1
SE_02_074500286 chr17:7347264-7352758 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 286 3 137 7 1 72 1041 ACAP1,KCTD11,EIF5A,GPS2,NEURL4,TMEM95,PLSCR3,TNK1
SE_01_009200952 chr17:7347593-7357494 Sample_01_0092 Vagina vagina 952 2 267 12 1 152 2031 ACAP1,TMEM95,KCTD11,GPS2,PLSCR3,EIF5A,TNK1,C17ORF61,NEURL4
SE_02_143301485 chr17:7347797-7352623 Sample_02_1433 Bone A673 STAG2 null 1485 2 117 6 1 69 952 ACAP1,KCTD11,EIF5A,GPS2,NEURL4,TMEM95,PLSCR3,TNK1
SE_02_142700556 chr17:7347836-7357820 Sample_02_1427 Shoulder fibroblast_343 556 3 267 12 1 152 2002 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,PLSCR3,TNK1
SE_02_142800903 chr17:7348038-7357924 Sample_02_1428 Shoulder fibroblast_316 903 2 266 12 1 151 1949 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,PLSCR3,TNK1
SE_02_142600493 chr17:7348103-7358007 Sample_02_1426 Shoulder fibroblast_341 493 4 263 12 1 151 1937 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,PLSCR3,TNK1
SE_02_081600982 chr17:7348185-7358155 Sample_02_0816 Ovary Clear cell ovarian cancer 982 4 265 13 1 149 1921 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,PLSCR3,TNK1
SE_02_119900857 chr17:7348198-7355859 Sample_02_1199 Brain GBM35 857 2 195 11 1 131 1566 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,PLSCR3,TNK1
SE_02_088601311 chr17:7348255-7372633 Sample_02_0886 Skin foreskin_ p63KLF4 1311 6 720 48 1 163 1899 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,SPEM1,NLGN2,NEURL4,PLSCR3,TNK1
SE_02_003200865 chr17:7348641-7357088 Sample_02_0032 Pancreas pancreatic-islets-M 865 1 230 11 1 146 1752 ACAP1,TMEM95,KCTD11,GPS2,PLSCR3,EIF5A,TNK1,C17ORF61,NEURL4
SE_02_064500198 chr17:7348952-7362389 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 198 3 372 19 0 148 1780 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_02_147200556 chr17:7349131-7352968 Sample_02_1472 Fetal lung IMR-90 556 1 85 4 0 68 756 ACAP1,KCTD11,EIF5A,GPS2,NEURL4,TMEM95,PLSCR3,TNK1
SE_02_049100741 chr17:7349135-7362670 Sample_02_0491 Pharyng Detroit 562-Control 741 5 375 20 0 136 1733 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_02_049200517 chr17:7349147-7356068 Sample_02_0492 Pharyng Detroit 562_LPS 517 2 178 9 0 118 1421 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,PLSCR3,TNK1
SE_02_064600342 chr17:7349209-7354351 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 342 2 119 7 0 93 1043 ACAP1,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,TMEM95,PLSCR3,TNK1
SE_01_003700945 chr17:7349277-7353136 Sample_01_0037 Liver hepatocyte 945 1 86 4 0 70 762 ACAP1,KCTD11,TMEM95,GPS2,PLSCR3,EIF5A,TNK1,NEURL4
SE_01_006600730 chr17:7349306-7355613 Sample_01_0066 Smooth muscle smooth-muscle-cell 730 1 157 8 0 112 1272 ACAP1,TMEM95,KCTD11,GPS2,PLSCR3,EIF5A,TNK1,C17ORF61,NEURL4
SE_02_147000505 chr17:7349407-7355800 Sample_02_1470 Umbilical Vein H441 505 1 166 9 0 113 1320 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,PLSCR3,TNK1
SE_02_086901005 chr17:7349427-7353243 Sample_02_0869 Fibroblast VH10_NO_UV 1005 1 89 4 0 73 780 ACAP1,KCTD11,EIF5A,GPS2,NEURL4,TMEM95,PLSCR3,TNK1
SE_02_103100586 chr17:7349435-7371609 Sample_02_1031 Head and neck SCC1 contol 586 12 662 41 0 145 1689 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,SPEM1,NLGN2,NEURL4,PLSCR3,TNK1
SE_01_010701299 chr17:7349462-7357878 Sample_01_0107 Esophagus esophagus squamous epithelium 1299 3 232 10 0 131 1689 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,PLSCR3,TNK1
SE_02_027400316 chr17:7349483-7353932 Sample_02_0274 Endometriosis hTERT_KD 316 1 104 5 0 92 929 ACAP1,KCTD11,TMEM95,GPS2,PLSCR3,EIF5A,TNK1,NEURL4
SE_02_064700307 chr17:7349491-7362755 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 307 4 374 20 0 131 1689 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_01_004500844 chr17:7349505-7355741 Sample_01_0045 Mammary gland mammary-epithelial-cell 844 2 161 8 0 113 1307 ACAP1,TMEM95,KCTD11,GPS2,PLSCR3,EIF5A,TNK1,C17ORF61,NEURL4
SE_02_010500592 chr17:7349514-7362794 Sample_02_0105 Skin neonatal_keratinocytes 592 2 377 20 0 131 1689 ACAP1,TMEM95,KCTD11,GPS2,PLSCR3,EIF5A,TNK1,C17ORF61,NLGN2,NEURL4
SE_02_076000704 chr17:7349522-7364324 Sample_02_0760 Ovary BIN-67_SMARCA4 704 2 423 21 0 131 1689 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_02_097100724 chr17:7349530-7357049 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 724 2 206 10 0 125 1618 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,PLSCR3,TNK1
SE_02_005600932 chr17:7349541-7362847 Sample_02_0056 Mammary gland HMEC 932 2 372 20 0 131 1689 ACAP1,TMEM95,KCTD11,GPS2,PLSCR3,EIF5A,TNK1,C17ORF61,NLGN2,NEURL4
SE_02_065000112 chr17:7349544-7362454 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 112 3 358 19 0 131 1689 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_02_006900718 chr17:7349566-7364183 Sample_02_0069 Brain SF268 718 2 409 20 0 131 1689 ACAP1,TMEM95,KCTD11,GPS2,PLSCR3,EIF5A,TNK1,C17ORF61,NLGN2,NEURL4
SE_02_050500819 chr17:7349568-7356271 Sample_02_0505 Esophagus KYSE70_1 819 1 176 9 0 116 1431 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,PLSCR3,TNK1
SE_02_142500371 chr17:7349623-7357842 Sample_02_1425 Shoulder fibroblast_384 371 2 226 10 0 131 1689 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,PLSCR3,TNK1
SE_02_024000655 chr17:7349666-7355603 Sample_02_0240 Colon V429_2 655 1 150 8 0 112 1268 ACAP1,TMEM95,KCTD11,GPS2,PLSCR3,EIF5A,TNK1,C17ORF61,NEURL4
SE_02_097900796 chr17:7349700-7357355 Sample_02_0979 Brain JN14-BS1_H3.3K27M 796 3 211 10 0 131 1677 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,PLSCR3,TNK1
SE_02_076300965 chr17:7349756-7362589 Sample_02_0763 Podocyte podocyte_DEX 965 2 360 20 0 131 1689 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_02_071201411 chr17:7349762-7354404 Sample_02_0712 Pancreas BxPC3_sgNEG 1411 2 108 7 0 93 1024 ACAP1,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,TMEM95,PLSCR3,TNK1
SE_02_126900728 chr17:7349763-7352960 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 728 1 72 4 0 61 708 ACAP1,KCTD11,EIF5A,GPS2,NEURL4,TMEM95,PLSCR3,TNK1
SE_01_002700796 chr17:7349773-7354477 Sample_01_0027 Prostate epithelial-cell-of-prostate 796 1 111 7 0 94 1036 ACAP1,KCTD11,TMEM95,GPS2,PLSCR3,EIF5A,TNK1,C17ORF61,NEURL4
SE_02_072701227 chr17:7349776-7353119 Sample_02_0727 Fetal lung IMR90_Etoposide 1227 1 75 4 0 70 754 ACAP1,KCTD11,EIF5A,GPS2,NEURL4,TMEM95,PLSCR3,TNK1
SE_02_136600255 chr17:7349779-7354367 Sample_02_1366 Pancreas BxPC3-untreated 255 2 108 7 0 93 1016 ACAP1,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,TMEM95,PLSCR3,TNK1
SE_02_103700676 chr17:7349805-7362666 Sample_02_1037 Pharynx FaDu Control 676 2 362 20 0 131 1686 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_02_064400165 chr17:7349806-7362462 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 165 3 355 19 0 131 1686 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_04_001000724 chr17:7349812-7353533 Sample_04_0010 Lung A549 TGFb 724 1 87 4 0 86 854 ACAP1,KCTD11,EIF5A,GPS2,NEURL4,TMEM95,PLSCR3,TNK1
SE_02_120000981 chr17:7349849-7356057 Sample_02_1200 Brain GBM36 981 1 165 9 0 114 1358 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,PLSCR3,TNK1
SE_02_047900975 chr17:7349858-7354378 Sample_02_0479 Head and neck SCC25 975 2 108 7 0 93 1005 ACAP1,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,TMEM95,PLSCR3,TNK1
SE_02_065200345 chr17:7349863-7362851 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 345 4 367 20 0 131 1674 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_02_114800280 chr17:7349876-7353598 Sample_02_1148 Kidney WT 9-12_control_vehicle 280 1 87 4 0 88 851 ACAP1,KCTD11,EIF5A,GPS2,NEURL4,TMEM95,PLSCR3,TNK1
SE_02_102500698 chr17:7349879-7362699 Sample_02_1025 Esophagus KYSE150 698 2 361 20 0 131 1671 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_02_154100473 chr17:7349980-7363371 Sample_02_1541 Nasopharyngeal HNE1 473 3 374 20 0 129 1650 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_02_064800827 chr17:7350373-7362759 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 827 3 349 19 0 122 1543 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_02_102600429 chr17:7350375-7362458 Sample_02_1026 Esophagus KYSE200 429 2 336 18 0 122 1542 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_02_048001130 chr17:7350406-7363209 Sample_02_0480 Gingival epithelial HGEP 1130 3 357 19 0 122 1538 ACAP1,TMEM95,KCTD11,EIF5A,GPS2,TMEM256-PLSCR3,NEURL4,NLGN2,PLSCR3,TNK1
SE_02_103601088 chr17:7358478-7401660 Sample_02_1036 Mammary gland HCC70_XY018 1088 11 1310 116 6 153 2252 TNK1,PLSCR3,TMEM256-PLSCR3,ACAP1,KCTD11,FGF11,TMEM102,GPS2,NLGN2,SPEM1,TMEM95,NEURL4,CHRNB1,C17ORF74
SE_02_103502243 chr17:7383829-7401660 Sample_02_1035 Mammary gland HCC70_Vehicle 2243 5 539 54 4 108 1850 TNK1,PLSCR3,TMEM256-PLSCR3,ACAP1,KCTD11,FGF11,TMEM102,NLGN2,SPEM1,TMEM95,CHRNB1,C17ORF74
SE_02_133400382 chr17:7388833-7401208 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 382 2 331 33 2 62 1108 TNK1,PLSCR3,TMEM256-PLSCR3,KCTD11,FGF11,TMEM102,NLGN2,SPEM1,TMEM95,CHRNB1,C17ORF74
SE_02_114800513 chr17:7400262-7414253 Sample_02_1148 Kidney WT 9-12_control_vehicle 513 3 370 31 2 353 696 TMEM256,TMEM256-PLSCR3,NLGN2,KCTD11,FGF11,TMEM102,SPEM1,TMEM95,PLSCR3,TNK1,CHRNB1,C17ORF74
SE_02_001900574 chr17:7402801-7421832 Sample_02_0019 Embryo Neural crest cells 574 4 504 42 2 500 2333 NLGN2,C17ORF61,SPEM1,TMEM95,FGF11,PLSCR3,CHRNB1,C17ORF74,TMEM102,TNK1
SE_02_104602477 chr17:7409832-7432603 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2477 7 680 41 0 292 2266 NLGN2,C17ORF74,SPEM1,FGF11,TMEM102,TMEM256-PLSCR3,SLC35G6,ZBTB4,PLSCR3,TNK1,CHRNB1
SE_02_118100659 chr17:7429777-7442001 Sample_02_1181 Brain GBM10 659 3 309 30 0 193 1189 TMEM102,FGF11,TMEM256-PLSCR3,NLGN2,SLC35G6,SPEM1,ZBTB4,POLR2A,PLSCR3,TNK1,CHRNB1,C17ORF74
SE_02_039601909 chr17:7435190-7438975 Sample_02_0396 Skin NHEK-D 1909 1 97 9 0 86 735 TMEM102,FGF11,AMAC1L3,POLR2A,PLSCR3,CHRNB1,C17ORF74,ZBTB4,C17ORF61,NLGN2,SPEM1
SE_02_136600778 chr17:7435426-7437541 Sample_02_1366 Pancreas BxPC3-untreated 778 1 66 4 0 53 449 TMEM102,FGF11,TMEM256-PLSCR3,NLGN2,SLC35G6,SPEM1,ZBTB4,POLR2A,PLSCR3,CHRNB1,C17ORF74
SE_02_065000803 chr17:7435443-7440968 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 803 1 134 12 0 132 1002 TMEM102,FGF11,TMEM256-PLSCR3,NLGN2,SLC35G6,SPEM1,ZBTB4,POLR2A,PLSCR3,CHRNB1,C17ORF74
SE_02_109400241 chr17:7435459-7437619 Sample_02_1094 Embryo H9_0Dox 241 1 67 5 0 53 470 TMEM102,FGF11,TMEM256-PLSCR3,NLGN2,SLC35G6,SPEM1,ZBTB4,POLR2A,PLSCR3,CHRNB1,C17ORF74
SE_02_064600233 chr17:7435462-7441394 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 233 1 145 13 0 148 1032 TMEM102,FGF11,TMEM256-PLSCR3,NLGN2,SLC35G6,SPEM1,ZBTB4,POLR2A,PLSCR3,CHRNB1,C17ORF74
SE_02_064700632 chr17:7435474-7441094 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 632 1 138 12 0 143 1007 TMEM102,FGF11,TMEM256-PLSCR3,NLGN2,SLC35G6,SPEM1,ZBTB4,POLR2A,PLSCR3,CHRNB1,C17ORF74
SE_02_065201081 chr17:7435485-7441009 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1081 1 135 12 0 137 1006 TMEM102,FGF11,TMEM256-PLSCR3,NLGN2,SLC35G6,SPEM1,ZBTB4,POLR2A,PLSCR3,CHRNB1,C17ORF74
SE_02_102700515 chr17:7435501-7438898 Sample_02_1027 Esophagus KYSE180_1 515 1 90 8 0 85 683 TMEM102,FGF11,TMEM256-PLSCR3,NLGN2,SLC35G6,SPEM1,ZBTB4,POLR2A,PLSCR3,CHRNB1,C17ORF74
SE_02_139400644 chr17:7435821-7441149 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 644 2 130 10 0 139 942 TMEM102,FGF11,TMEM256-PLSCR3,NLGN2,SLC35G6,SPEM1,ZBTB4,POLR2A,PLSCR3,CHRNB1,C17ORF74
SE_02_064500743 chr17:7437197-7441576 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 743 1 92 9 0 122 692 TMEM102,FGF11,TMEM256-PLSCR3,NLGN2,SLC35G6,SPEM1,ZBTB4,POLR2A,PLSCR3,CHRNB1,C17ORF74
SE_02_001700728 chr17:7439172-7442146 Sample_02_0017 Embryo H9_ESC 728 1 65 5 0 76 470 FGF11,AMAC1L3,POLR2A,PLSCR3,CHRNB1,C17ORF74,ZBTB4,TMEM102,C17ORF61,NLGN2,SPEM1
SE_02_154100973 chr17:7442779-7456686 Sample_02_1541 Nasopharyngeal HNE1 973 5 344 34 1 104 1399 FGF11,CHRNB1,TMEM102,TMEM256-PLSCR3,NLGN2,SLC35G6,SPEM1,ZBTB4,POLR2A,PLSCR3,C17ORF74
Genomic distribution of SEs associated with PLSCR3
Genome Browser

The strength of the tissue affected by the gene

Expression of PLSCR3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)