SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000254453
Gene: NAV2-AS2 Gene type: lncRNA
Strand: - External links:
Genomic region: chr11:20043846-20049303 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_045200060 chr11:19877687-20006042 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 60 38 4110 125 53 324 816 NAV2,NAV2-AS2
SE_02_058600575 chr11:19947763-20000339 Sample_02_0586 Chordal patient-derived chordoma MGH_4 575 11 1764 102 10 100 218 NAV2,NAV2-AS2
SE_02_108000026 chr11:19951002-20043355 Sample_02_1080 Muscle JR1 shCtrl 26 44 2976 118 13 223 368 NAV2,NAV2-AS2
SE_02_087700017 chr11:19951687-20042545 Sample_02_0877 Muscle SMS-CTR_CASZ1b_Dox 17 41 2932 118 12 218 368 NAV2,NAV2-AS2
SE_02_137400237 chr11:19951787-20001295 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 237 33 1667 100 9 85 94 NAV2,NAV2-AS2
SE_00_005200338 chr11:19951833-20017418 Sample_00_0052 Heart left ventricle 3y 338 37 2152 112 10 121 94 NAV2,NAV2-AS2
SE_02_096700350 chr11:19953063-20005955 Sample_02_0967 Brain H3.3K27M_JN57 350 14 1779 102 9 93 94 NAV2,NAV2-AS2
SE_02_157500148 chr11:19968851-20043523 Sample_02_1575 Mammary gland MCF7_Mock 148 19 2388 104 9 208 368 NAV2,NAV2-AS2
SE_02_127800978 chr11:19970125-20000984 Sample_02_1278 Chordoma UCH1_DMSO_48h 978 5 1035 83 5 72 94 NAV2,NAV2-AS2
SE_02_103300182 chr11:19971633-20000828 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 182 6 991 79 5 72 94 NAV2,NAV2-AS2
SE_00_005700495 chr11:19972569-20017418 Sample_00_0057 Heart right ventricle 3y 495 34 1461 90 6 108 94 NAV2,NAV2-AS2
SE_02_052400020 chr11:19972619-20042970 Sample_02_0524 Pancreas iPS derived pancreatic precursor cells_Lane2 20 27 2248 96 8 206 368 NAV2,NAV2-AS2
SE_02_098700444 chr11:19972745-20000839 Sample_02_0987 Blood K562_Control_1 444 8 952 78 5 72 94 NAV2,NAV2-AS2
SE_02_047600025 chr11:19972838-20034329 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 25 25 1945 94 8 174 286 NAV2,NAV2-AS2
SE_02_075400294 chr11:19972844-20005850 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 294 7 1112 81 5 81 94 NAV2,NAV2-AS2
SE_02_074800713 chr11:19977078-20040574 Sample_02_0748 Mammary gland HCC1599_WO 713 21 2036 82 7 191 368 NAV2,NAV2-AS2
SE_02_152300363 chr11:19977237-20016354 Sample_02_1523 Lung A549 DMSO 363 10 1294 76 4 97 94 NAV2,NAV2-AS2
SE_02_118601035 chr11:19977930-20009262 Sample_02_1186 Brain GBM15 1035 12 1037 68 3 78 94 NAV2,NAV2-AS2
SE_02_066101030 chr11:19978137-20016199 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 1030 12 1240 74 3 95 94 NAV2,NAV2-AS2
SE_02_119100765 chr11:19978668-20010061 Sample_02_1191 Brain GBM25 765 16 1022 69 3 77 94 NAV2,NAV2-AS2
SE_02_119500677 chr11:19978851-20009985 Sample_02_1195 Brain GBM29 677 17 1015 69 3 75 94 NAV2,NAV2-AS2
SE_02_118100526 chr11:19979123-20009333 Sample_02_1181 Brain GBM10 526 14 990 68 3 71 94 NAV2,NAV2-AS2
SE_02_052500018 chr11:19987498-20037293 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 18 24 1557 46 6 138 274 NAV2,NAV2-AS2
SE_02_077501547 chr11:19994185-20027799 Sample_02_0775 Pancreas EndoC-BH1_SE 1547 10 1043 24 2 110 178 NAV2,NAV2-AS2
SE_02_127300707 chr11:19994332-20037690 Sample_02_1273 Cervix HeLa 707 16 1352 30 4 135 274 NAV2,NAV2-AS2
SE_02_125500225 chr11:19994487-20032394 Sample_02_1255 Bladder Bladder tumor Luminal2 225 15 1176 25 3 114 192 NAV2,NAV2-AS2
SE_02_077600276 chr11:19996425-20032379 Sample_02_0776 Pancreas EndoC-BH1 276 10 1119 23 3 112 192 NAV2,NAV2-AS2
SE_02_075600112 chr11:19998611-20043251 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 112 13 1398 24 4 145 274 NAV2,NAV2-AS2
SE_02_068700309 chr11:19998746-20043556 Sample_02_0687 Lung NCI-H146_no infection 309 12 1397 24 4 146 274 NAV2,NAV2-AS2
SE_02_055000169 chr11:19998998-20031614 Sample_02_0550 Other Aska-BAF47KO1 shCt 169 11 979 19 3 111 192 NAV2,NAV2-AS2
SE_02_129000260 chr11:19999145-20036462 Sample_02_1290 Lung NCI-H69_p8-15 260 11 1131 22 4 128 274 NAV2,NAV2-AS2
SE_02_103100610 chr11:19999301-20043770 Sample_02_1031 Head and neck SCC1 contol 610 10 1378 24 4 146 274 NAV2,NAV2-AS2
SE_02_049400109 chr11:19999389-20032727 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 109 13 999 19 3 111 192 NAV2,NAV2-AS2
SE_02_075700055 chr11:19999578-20035250 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 55 9 1071 21 4 112 192 NAV2,NAV2-AS2
SE_02_052300258 chr11:19999664-20043283 Sample_02_0523 Lung NCIH810 258 14 1342 21 4 145 274 NAV2,NAV2-AS2
SE_02_049500183 chr11:19999719-20028077 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 183 11 828 14 1 107 192 NAV2,NAV2-AS2
SE_02_075300105 chr11:19999773-20042870 Sample_02_0753 Embryo ES-derived progenitors_FG type 105 9 1324 20 3 143 274 NAV2,NAV2-AS2
SE_02_067201082 chr11:19999777-20031825 Sample_02_0672 Endometrium endometrium cancer_DSG 1082 18 945 15 2 111 192 NAV2,NAV2-AS2
SE_02_049300072 chr11:19999826-20042137 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 72 16 1302 20 3 143 274 NAV2,NAV2-AS2
SE_02_067401059 chr11:19999917-20029379 Sample_02_0674 Endometrium E1_FA 1059 10 882 14 2 107 192 NAV2,NAV2-AS2
SE_02_069500080 chr11:20001055-20037973 Sample_02_0695 Lung NCI-H889_no infection 80 10 1098 18 3 122 274 NAV2,NAV2-AS2
SE_02_065201168 chr11:20003097-20036368 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1168 14 982 16 3 111 274 NAV2,NAV2-AS2
SE_02_151600711 chr11:20011128-20037681 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 711 8 785 10 3 94 274 NAV2,NAV2-AS2
SE_02_137400628 chr11:20015811-20043312 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 628 20 858 6 3 99 274 NAV2,NAV2-AS2
SE_02_074200540 chr11:20017221-20032330 Sample_02_0742 Embryo ESCs_day0 540 6 433 2 1 65 192 NAV2,NAV2-AS2
SE_02_075400229 chr11:20019487-20042268 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 229 7 713 6 2 97 274 NAV2,NAV2-AS2
SE_02_056000546 chr11:20022822-20032311 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 546 5 284 2 1 55 157 NAV2,NAV2-AS2
SE_02_129200776 chr11:20025427-20029719 Sample_02_1292 Lung JHU-LX110-SCLC PDX 776 4 142 1 1 25 66 NAV2,NAV2-AS2
SE_02_129400232 chr11:20026878-20036901 Sample_02_1294 Lung JHU-LX44-SCLC PDX 232 6 313 4 2 31 148 NAV2,NAV2-AS2
SE_01_011000517 chr11:20059730-20128218 Sample_01_0110 Aorta thoracic aorta_37y 517 33 2145 79 11 213 1897 NAV2,DBX1,NAV2-AS2
SE_02_053300771 chr11:20081922-20132553 Sample_02_0533 Blood vessel Circle of Willis_54y 771 21 1546 53 8 156 1620 NAV2,DBX1,NAV2-AS2
SE_01_009300965 chr11:20084452-20128982 Sample_01_0093 Aorta ascending aorta 965 23 1365 52 8 144 1504 NAV2,DBX1,NAV2-AS2
SE_02_104603334 chr11:20085645-20132587 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3334 16 1428 50 7 144 1504 NAV2,DBX1,NAV2-AS2
SE_02_052500716 chr11:20085801-20101131 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 716 6 439 8 6 58 394 NAV2,NAV2-AS2
SE_02_093600847 chr11:20086853-20126624 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 847 10 1216 48 7 141 1504 NAV2,DBX1,NAV2-AS2
SE_02_118601141 chr11:20087491-20113330 Sample_02_1186 Brain GBM15 1141 6 771 19 5 87 954 NAV2,DBX1,NAV2-AS2
SE_02_083900875 chr11:20087512-20113307 Sample_02_0839 Embryo hNPCs_K755R/+ 875 9 768 18 5 86 954 NAV2,DBX1,NAV2-AS2
SE_02_049300600 chr11:20087552-20092493 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 600 2 109 5 1 9 130 NAV2,NAV2-AS2
SE_02_137400627 chr11:20089160-20132519 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 627 18 1321 48 5 132 1504 NAV2,DBX1,NAV2-AS2
SE_02_083100924 chr11:20089837-20113313 Sample_02_0831 Umblical vein HUVECs_TNF0min 924 13 711 16 4 85 954 NAV2,DBX1,NAV2-AS2
SE_02_156901309 chr11:20090304-20113583 Sample_02_1569 Endothelial Endothelial cells 1309 5 709 17 4 86 954 NAV2,DBX1,NAV2-AS2
SE_02_095600754 chr11:20091095-20121336 Sample_02_0956 Brain IDH1_2658 754 19 936 40 5 110 1409 NAV2,DBX1,NAV2-AS2
SE_02_096700791 chr11:20093084-20113596 Sample_02_0967 Brain H3.3K27M_JN57 791 12 651 13 4 72 778 NAV2,DBX1,NAV2-AS2
SE_02_137801030 chr11:20093484-20127300 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 1030 15 1079 42 5 109 1291 NAV2,DBX1,NAV2-AS2
SE_02_093800736 chr11:20096809-20125976 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 736 6 928 41 4 99 1221 NAV2,DBX1,NAV2-AS2
SE_02_137700860 chr11:20097138-20132500 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 860 11 1111 42 4 101 1221 NAV2,DBX1,NAV2-AS2
Genomic distribution of SEs associated with NAV2-AS2
Genome Browser

The strength of the tissue affected by the gene

Expression of NAV2-AS2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)