SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000267206
Gene: LCN6 Gene type: protein_coding
Strand: - External links:
Genomic region: chr9:136744017-136748525 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_023700393 chr9:136665125-136705744 Sample_02_0237 Colon V389 393 7 1554 100 1 71 2163 AGPAT2,EGFL7,MIR126,SNORA43,LCN10,SNORA17,LOC100128593,LCN6,SNHG7,FAM69B
SE_02_046500159 chr9:136667749-136701310 Sample_02_0465 Adipose subcutaneous adipocytes 159 16 1342 73 1 61 2007 EGFL7,MIR126,AGPAT2,LOC100128593,LCN6,FAM69B,SNHG7,MIR6722,SNORA17,SNORA43,LCN10
SE_02_153900124 chr9:136671792-136722480 Sample_02_1539 Nasopharyngeal C666-1 124 11 1904 148 2 82 2055 FAM69B,EGFL7,AGPAT2,LOC100128593,LCN6,LCN15,LCN8,SNHG7,MIR126,MIR6722,SNORA43,LCN10,SNORA17
SE_02_152901018 chr9:136672359-136701874 Sample_02_1529 Peripheral blood neutrophils_0BC75 1018 21 1128 68 1 34 1131 EGFL7,AGPAT2,LOC100128593,LCN6,FAM69B,SNHG7,MIR126,MIR6722,SNORA17,SNORA43,LCN10
SE_01_010100522 chr9:136674259-136698844 Sample_01_0101 Pancreas pancreas_54y 522 6 938 52 1 30 666 AGPAT2,LOC100128593,LCN6,FAM69B,EGFL7,SNHG7,MIR126,MIR6722,SNORA17,SNORA43,LCN10
SE_00_004900133 chr9:136674422-136698874 Sample_00_0049 Small intestine small intestine 30y 133 9 937 52 1 29 666 AGPAT2,LOC100128593,LCN6,FAM69B,EGFL7,SNHG7,MIR126,MIR6722,SNORA17,SNORA43,LCN10,EDF1,FBXW5,RABL6,LCN15
SE_02_020200066 chr9:136674434-136698934 Sample_02_0202 Stomach YCC7 66 6 938 53 1 29 666 AGPAT2,EGFL7,SNORA43,LCN10,SNORA17,LOC100128593,LCN6,SNHG7,MIR126,FAM69B
SE_02_035400830 chr9:136674446-136706479 Sample_02_0354 Colon Colo205 830 4 1187 87 1 29 666 AGPAT2,EGFL7,SNORA43,LCN10,SNORA17,LOC100128593,LCN6,SNHG7,MIR126,FAM69B
SE_02_125300820 chr9:136674585-136710133 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 820 16 1300 97 1 29 654 AGPAT2,LOC100128593,LCN6,FAM69B,LCN8,SNHG7,MIR126,MIR6722,EGFL7,SNORA43,LCN10,SNORA17
SE_01_007100184 chr9:136675044-136698938 Sample_01_0071 Pancreas body-of-pancreas 184 4 904 52 1 28 552 AGPAT2,EGFL7,SNORA43,LCN10,SNORA17,LOC100128593,LCN6,SNHG7,MIR126,FAM69B
SE_01_010300429 chr9:136675197-136698565 Sample_01_0103 Pancreas pancreas_37y 429 4 881 47 1 28 552 AGPAT2,LOC100128593,LCN6,FAM69B,EGFL7,SNHG7,MIR126,MIR6722,SNORA17,SNORA43,LCN10
SE_02_137100392 chr9:136675362-136698893 Sample_02_1371 Pancreas Patu899S-untreated 392 6 884 52 1 26 552 AGPAT2,LOC100128593,LCN6,FAM69B,EGFL7,SNHG7,MIR126,MIR6722,SNORA17,SNORA43,LCN10
SE_02_082601093 chr9:136675528-136700960 Sample_02_0826 Stomach gastric tumor 1093 17 937 56 1 26 552 AGPAT2,LOC100128593,LCN6,FAM69B,EGFL7,SNHG7,MIR126,MIR6722,SNORA17,SNORA43,LCN10
SE_02_133200729 chr9:136677212-136706126 Sample_02_1332 Blood Monomac6_CTRL 729 8 1035 82 1 21 356 AGPAT2,LOC100128593,LCN6,FAM69B,EGFL7,SNHG7,MIR126,MIR6722,SNORA17,SNORA43,LCN10
SE_02_010000781 chr9:136678058-136701992 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 781 7 837 59 1 18 206 AGPAT2,EGFL7,SNORA43,LCN10,SNORA17,LOC100128593,LCN6,SNHG7,MIR126,FAM69B
SE_02_032601084 chr9:136678744-136699705 Sample_02_0326 Liver hepatocytes_d3 1084 7 735 51 1 18 206 AGPAT2,EGFL7,SNORA43,LCN10,SNORA17,LOC100128593,LCN6,SNHG7,MIR126,FAM69B
SE_02_104901962 chr9:136679177-136701820 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1962 6 789 56 1 18 206 AGPAT2,LOC100128593,LCN6,FAM69B,EGFL7,SNHG7,MIR126,MIR6722,SNORA17,SNORA43,LCN10
SE_02_104801099 chr9:136679468-136701690 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1099 6 773 56 1 18 206 AGPAT2,LOC100128593,LCN6,FAM69B,EGFL7,SNHG7,MIR126,MIR6722,SNORA17,SNORA43,LCN10
SE_02_034400034 chr9:136683201-136724087 Sample_02_0344 Blood CD34 34 5 1476 137 1 87 1317 FAM69B,AGPAT2,EGFL7,SNORA43,LCN10,SNORA17,LOC100128593,LCN6,LCN8,SNHG7,MIR126,LCN15
SE_02_003200510 chr9:136684354-136698646 Sample_02_0032 Pancreas pancreatic-islets-M 510 1 503 33 0 18 206 AGPAT2,EGFL7,SNORA43,LCN10,SNORA17,LOC100128593,LCN6,SNHG7,MIR126,FAM69B
SE_02_123600215 chr9:136684688-136704040 Sample_02_1236 Skin MKL1_virus_positive 215 9 668 58 0 18 206 AGPAT2,LOC100128593,LCN6,FAM69B,EGFL7,SNHG7,MIR126,MIR6722,SNORA17,SNORA43,LCN10
SE_02_151400791 chr9:136685351-136698971 Sample_02_1514 Lung Differentiated AT1-like cells 791 7 473 34 0 18 206 AGPAT2,LOC100128593,LCN6,FAM69B,EGFL7,SNHG7,MIR126,MIR6722,SNORA17,SNORA43,LCN10
SE_01_007900390 chr9:136685389-136699045 Sample_01_0079 Peyers patch Peyers-patch 390 1 472 34 0 18 206 AGPAT2,EGFL7,SNORA43,LCN10,SNORA17,LOC100128593,LCN6,SNHG7,MIR126,FAM69B
SE_02_123700169 chr9:136687656-136704332 Sample_02_1237 Skin MKL2_virus_positive 169 4 586 52 0 9 0 LOC100128593,LCN6,FAM69B,AGPAT2,EGFL7,SNHG7,MIR126,MIR6722,SNORA17,SNORA43,LCN10
SE_02_004800714 chr9:136693030-136701999 Sample_02_0048 Embryo endodermal CyT49_HE 714 4 317 31 0 0 0 EGFL7,SNORA43,LCN10,SNORA17,LOC100128593,AGPAT2,LCN6,SNHG7,MIR126,FAM69B
SE_02_048300183 chr9:136697824-136715067 Sample_02_0483 Bone marrow HSCe_22y_CD34+,CD38-,Lineage- 183 6 535 55 0 7 177 FAM69B,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,SNHG7,MIR126,MIR6722,EGFL7,SNORA43,LCN10,SNORA17
SE_02_048900280 chr9:136700256-136715444 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 280 4 478 48 0 7 177 FAM69B,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,SNHG7,MIR126,MIR6722,EGFL7,SNORA43,LCN10,SNORA17
SE_02_048400297 chr9:136700387-136717532 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 297 5 574 54 0 8 220 FAM69B,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,SNHG7,MIR126,MIR6722,EGFL7,SNORA43,LCN10,SNORA17
SE_02_082100390 chr9:136700853-136719706 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 390 4 648 63 0 18 325 FAM69B,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,SNHG7,MIR126,MIR6722,EGFL7,SNORA43,LCN10,SNORA17
SE_02_048200430 chr9:136700934-136715165 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 430 4 450 45 0 7 177 FAM69B,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,SNHG7,MIR126,MIR6722,EGFL7,SNORA43,LCN10,SNORA17
SE_02_005000222 chr9:136703504-136724622 Sample_02_0050 Skin BJ 222 7 776 79 1 69 1212 FAM69B,SNHG7,EGFL7,SNORA43,LCN10,SNORA17,LOC100128593,AGPAT2,LCN6,LCN8,MIR126,LCN15
SE_02_146900352 chr9:136711672-136722582 Sample_02_1469 Umbilical Vein HUVEC 352 1 429 43 1 39 791 FAM69B,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,SNHG7,MIR126,MIR6722,SNORA17,EGFL7,SNORA43,LCN10
SE_02_083100255 chr9:136712540-136722728 Sample_02_0831 Umblical vein HUVECs_TNF0min 255 6 423 44 1 39 773 FAM69B,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,SNHG7,MIR126,MIR6722,SNORA17,EGFL7,SNORA43,LCN10
SE_02_095000521 chr9:136712560-136723247 Sample_02_0950 Umbilical vein HUVEC_WT 521 2 457 51 1 49 881 FAM69B,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,SNHG7,MIR126,MIR6722,SNORA17,EGFL7,SNORA43,LCN10
SE_02_082000619 chr9:136712602-136719617 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 619 3 276 22 0 16 248 FAM69B,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,SNHG7,MIR126,MIR6722,SNORA17,EGFL7,SNORA43,LCN10
SE_02_134300320 chr9:136712658-136716616 Sample_02_1343 Leukophereses leukophereses_p195 320 1 145 6 0 2 82 FAM69B,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,SNHG7,MIR126,MIR6722,SNORA17,EGFL7,SNORA43,LCN10
SE_02_058500819 chr9:136712670-136724116 Sample_02_0585 Umbilical vein HUVEC 0hour 819 7 504 54 1 63 1018 FAM69B,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,SNHG7,MIR126,MIR6722,SNORA17,EGFL7,SNORA43,LCN10
SE_02_151800086 chr9:136712705-136722824 Sample_02_1518 Umbilical vein HUVEC_Scr 86 4 424 46 1 32 743 FAM69B,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,SNHG7,MIR126,MIR6722,SNORA17,EGFL7,SNORA43,LCN10
SE_02_151900295 chr9:136712958-136722555 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 295 6 410 43 1 32 609 FAM69B,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,SNHG7,MIR126,MIR6722,SNORA17,EGFL7,SNORA43,LCN10
SE_02_152000234 chr9:136714655-136722013 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 234 5 317 36 0 22 451 FAM69B,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,SNHG7,MIR126,MIR6722,SNORA17,EGFL7,SNORA43,LCN10
SE_02_032300262 chr9:136724397-136730346 Sample_02_0323 Colon RKO 262 1 219 30 0 6 638 FAM69B,SNHG7,SNORA43,SNORA17,LCN10,LOC100128593,LCN15,AGPAT2,LCN6,LCN8
SE_01_001200609 chr9:136724458-136730227 Sample_01_0012 Lung A549_dexamethasone_1h 609 1 209 30 0 6 625 FAM69B,SNHG7,SNORA43,SNORA17,LCN10,LOC100128593,LCN15,AGPAT2,LCN6,LCN8
SE_02_039601620 chr9:136725335-136730258 Sample_02_0396 Skin NHEK-D 1620 1 173 27 0 6 464 SNHG7,SNORA43,SNORA17,LCN10,LOC100128593,LCN15,AGPAT2,LCN6,LCN8,FAM69B
SE_02_029300425 chr9:136725352-136730066 Sample_02_0293 Pancreatic L3-6_4SC-202 425 1 163 27 0 6 461 SNHG7,SNORA43,SNORA17,LCN10,LOC100128593,LCN15,AGPAT2,LCN6,LCN8,FAM69B
SE_02_043600502 chr9:136725358-136729534 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 502 1 152 27 0 6 460 SNHG7,SNORA43,SNORA17,LCN10,LOC100128593,LCN15,AGPAT2,LCN6,LCN8,FAM69B
SE_02_058400781 chr9:136725374-136729265 Sample_02_0584 Lung H1299 WT 781 1 147 26 0 6 457 SNHG7,SNORA43,SNORA17,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,MIR6722,FAM69B,LCN10
SE_02_132200863 chr9:136725421-136729516 Sample_02_1322 Connective Tissue HT1080_WT 863 1 150 26 0 6 450 SNHG7,SNORA43,SNORA17,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,MIR6722,FAM69B,LCN10
SE_02_111400248 chr9:136725533-136728927 Sample_02_1114 Embryonic kidney HEK293 248 1 125 23 0 6 431 SNHG7,SNORA43,SNORA17,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,MIR6722,FAM69B,LCN10
SE_02_102500767 chr9:136725819-136729550 Sample_02_1025 Esophagus KYSE150 767 1 133 24 0 6 372 SNHG7,SNORA43,SNORA17,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,MIR6722,FAM69B,LCN10
SE_02_143301323 chr9:136725865-136729367 Sample_02_1433 Bone A673 STAG2 null 1323 1 126 22 0 6 369 SNHG7,SNORA43,SNORA17,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,MIR6722,FAM69B,LCN10
SE_02_110400754 chr9:136725909-136730218 Sample_02_1104 Brain NB-69 754 1 144 22 0 6 360 SNHG7,SNORA43,SNORA17,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,MIR6722,FAM69B,LCN10
SE_02_102700338 chr9:136726052-136729561 Sample_02_1027 Esophagus KYSE180_1 338 1 123 21 0 6 337 SNHG7,SNORA43,SNORA17,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,MIR6722,FAM69B,LCN10
SE_02_143201691 chr9:136726157-136729290 Sample_02_1432 Bone A673 STAG2 WT 1691 1 112 20 0 6 324 SNHG7,SNORA43,SNORA17,LOC100128593,LCN6,LCN15,AGPAT2,LCN8,MIR6722,FAM69B,LCN10
SE_02_045300665 chr9:136758611-136770948 Sample_02_0453 Neuroblastoma SJNB3 665 3 402 67 0 7 766 LCN15,LOC100128593,LCN6,CCDC183,RABL6,LCN8,SNHG7,MIR6722,SNORA17,FAM69B,TMEM141,SNORA43,LCN10,CCDC183-AS1
SE_02_035300444 chr9:136766579-136801938 Sample_02_0353 Colon HT29 444 4 1168 185 0 29 1092 TMEM141,KIAA1984,MIR4292,SNORA43,C9ORF172,LCN10,SNORA17,LOC100128593,PHPT1,LOC100131193,LCN8,SNHG7,LCN6,C9ORF86,LCN15
SE_02_024100246 chr9:136766611-136801345 Sample_02_0241 Colon V456 246 7 1153 181 0 28 1092 TMEM141,KIAA1984,MIR4292,SNORA43,C9ORF172,LCN10,SNORA17,LOC100128593,PHPT1,LOC100131193,LCN8,SNHG7,LCN6,C9ORF86,LCN15
SE_02_032200614 chr9:136776439-136801727 Sample_02_0322 Colon Caco-2 614 5 844 133 0 29 1092 TMEM141,KIAA1984,MIR4292,C9ORF172,LCN10,SNORA17,LOC100128593,PHPT1,LOC100131193,LCN8,SNHG7,LCN6,C9ORF86,LCN15
SE_00_003600431 chr9:136776597-136796864 Sample_00_0036 Small intestine small-intestine_108days 431 4 707 116 0 21 644 TMEM141,KIAA1984,MIR4292,C9ORF172,LCN10,SNORA17,LOC100128593,LOC100131193,LCN8,SNHG7,LCN6,C9ORF86,LCN15
SE_02_047600111 chr9:136776600-136801055 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 111 16 826 130 0 27 1092 TMEM141,CCDC183,LOC100128593,LCN6,PHPT1,RABL6,LCN15,LCN8,SNHG7,MIR6722,SNORA17,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_155600588 chr9:136777099-136801751 Sample_02_1556 Gastrointestinal Stromal GIST-5_KIT e9 588 6 826 130 0 29 1092 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,SNHG7,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_004400050 chr9:136778943-136796850 Sample_02_0044 Embryo endodermal CyT49_ES_D5 50 9 633 112 0 21 644 TMEM141,KIAA1984,MIR4292,C9ORF172,LCN10,LOC100128593,LOC100131193,LCN8,LCN6,C9ORF86,LCN15
SE_02_074501451 chr9:136779679-136782767 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1451 1 126 28 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_049500577 chr9:136780043-136801107 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 577 5 715 117 0 27 1092 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_049400348 chr9:136780109-136801717 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 348 6 724 116 0 29 1092 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_001200025 chr9:136780536-136802216 Sample_02_0012 Kidney 786-O_non-targeting 25 6 722 108 0 29 1092 TMEM141,KIAA1984,MIR4292,C9ORF172,LCN10,LOC100128593,PHPT1,LOC100131193,LCN8,LCN6,C9ORF86,LCN15
SE_02_049300610 chr9:136780809-136801691 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 610 6 693 106 0 29 1092 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_140900297 chr9:136780813-136805506 Sample_02_1409 Prostate LNCaP_R1881 4h_MED19_OE 297 5 859 112 0 41 1636 TMEM141,CCDC183,CCDC183-AS1,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10
SE_02_092200951 chr9:136780874-136801351 Sample_02_0922 Heart fetal heart_PCW10_12434 951 5 684 106 0 28 1092 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_082000692 chr9:136780876-136790764 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 692 3 352 72 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_146500402 chr9:136783040-136803463 Sample_02_1465 Ovary CAOV4cis 402 5 665 93 0 37 1229 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10,CCDC183-AS1
SE_04_000200768 chr9:136783710-136795535 Sample_04_0002 Blood cold shocked K562 768 1 398 62 0 19 558 TMEM141,LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,MIR6722,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_026700278 chr9:136783829-136791016 Sample_02_0267 Kidney 786-O 278 1 237 49 0 0 0 TMEM141,MIR4292,LCN10,LOC100128593,KIAA1984,LOC100131193,LCN8,LCN6,C9ORF86,LCN15
SE_04_000101224 chr9:136783831-136792689 Sample_04_0001 Blood heat shocked K562 1224 1 297 58 0 17 387 TMEM141,LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_109500555 chr9:136784030-136801056 Sample_02_1095 Blood CD34 Erythroid cells_Don002 555 4 553 82 0 27 1092 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_158000017 chr9:136784063-136810423 Sample_02_1580 Renal 786-O 17 1 871 100 0 77 2429 TMEM141,RABL6,CCDC183,CCDC183-AS1,LOC100128593,LCN6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10
SE_02_158200096 chr9:136784285-136803156 Sample_02_1582 Renal OS-RC-2 96 5 606 84 0 37 1229 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10,CCDC183-AS1
SE_01_002300127 chr9:136784309-136801941 Sample_01_0023 Embryo cardiac-muscle-cell 127 2 558 81 0 29 1092 TMEM141,KIAA1984,MIR4292,C9ORF172,LCN10,LOC100128593,PHPT1,LOC100131193,LCN8,LCN6,C9ORF86,LCN15
SE_02_157900127 chr9:136784358-136801811 Sample_02_1579 Renal 786-M1A 127 1 553 81 0 29 1092 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_158100234 chr9:136784419-136803098 Sample_02_1581 Renal OS-LM1 234 7 598 84 0 37 1229 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10,CCDC183-AS1
SE_02_076400210 chr9:136784478-136807863 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 210 4 786 96 0 57 2119 TMEM141,CCDC183-AS1,CCDC183,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10
SE_02_066900725 chr9:136784608-136801264 Sample_02_0669 Prostate prostate cancer_DSG 725 5 535 81 0 28 1092 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_075300295 chr9:136784684-136790942 Sample_02_0753 Embryo ES-derived progenitors_FG type 295 1 208 46 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_052500283 chr9:136784865-136801120 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 283 5 526 78 0 27 1092 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_111101221 chr9:136784919-136803224 Sample_02_1111 Other HGrC1_SMAD2/3KO 1221 9 585 81 0 37 1229 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10,CCDC183-AS1
SE_02_129900540 chr9:136785220-136805331 Sample_02_1299 Liver liver 540 12 675 79 0 40 1602 TMEM141,CCDC183,CCDC183-AS1,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10
SE_02_046900403 chr9:136785368-136790693 Sample_02_0469 Kidney 786-O PBRM1 shRNA#2 403 4 170 37 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_075600446 chr9:136785500-136790869 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 446 1 172 34 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_020700508 chr9:136786618-136801136 Sample_02_0207 Stomach FU97 508 5 455 49 0 27 1092 TMEM141,KIAA1984,MIR4292,C9ORF172,LCN10,LOC100128593,PHPT1,LOC100131193,LCN8,LCN6,C9ORF86,LCN15
SE_02_047700169 chr9:136787239-136801246 Sample_02_0477 Colon intestinal epithelial organoids_139a 169 1 430 49 0 28 1092 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_023600410 chr9:136787254-136801210 Sample_02_0236 Colon V206 410 5 429 49 0 28 1092 TMEM141,KIAA1984,MIR4292,C9ORF172,LCN10,LOC100128593,PHPT1,LOC100131193,LCN8,LCN6,C9ORF86,LCN15
SE_02_047800509 chr9:136787356-136797502 Sample_02_0478 Colon normal colon mucosa 509 1 326 37 0 21 644 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_004900322 chr9:136787449-136797004 Sample_02_0049 Embryo endodermal CyT49_GTtoH 322 1 309 34 0 21 644 TMEM141,KIAA1984,MIR4292,C9ORF172,LCN10,LOC100128593,LOC100131193,LCN8,LCN6,C9ORF86,LCN15
SE_01_008000454 chr9:136787458-136804984 Sample_01_0080 Prostate prostate 454 3 577 53 0 40 1519 TMEM141,KIAA1984,LOC100131193,MIR4292,C9ORF172,LCN10,LOC100128593,PHPT1,LCN8,MAMDC4,LCN6,C9ORF86,LCN15
SE_01_003700266 chr9:136787546-136801480 Sample_01_0037 Liver hepatocyte 266 1 428 47 0 29 1092 TMEM141,KIAA1984,MIR4292,C9ORF172,LCN10,LOC100128593,PHPT1,LOC100131193,LCN8,LCN6,C9ORF86,LCN15
SE_00_002000503 chr9:136787719-136798184 Sample_00_0020 Large intestine large-intestine_108d 503 1 342 36 0 21 644 TMEM141,KIAA1984,MIR4292,C9ORF172,LCN10,LOC100128593,LOC100131193,LCN8,LCN6,C9ORF86,LCN15
SE_02_075700527 chr9:136787753-136790886 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 527 1 91 12 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_076500112 chr9:136787782-136803290 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 112 1 481 49 0 37 1229 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10,CCDC183-AS1
SE_01_000100095 chr9:136787829-136801522 Sample_01_0001 Prostate 22Rv1 95 2 419 46 0 29 1092 TMEM141,KIAA1984,MIR4292,C9ORF172,LCN10,LOC100128593,PHPT1,LOC100131193,LCN8,LCN6,C9ORF86,LCN15
SE_02_077400160 chr9:136787834-136801739 Sample_02_0774 Prostate 22Rv1_delSite1_Clone11/12-D8 160 4 422 46 0 29 1092 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_075400670 chr9:136787840-136790852 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 670 1 85 12 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_02_110700737 chr9:136787846-136806161 Sample_02_1107 Brain SK-N-AS 737 10 614 57 0 42 1735 TMEM141,CCDC183,CCDC183-AS1,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10
SE_02_074500218 chr9:136787861-136790873 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 218 1 86 12 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_01_006800091 chr9:136787909-136801572 Sample_01_0068 Prostate: derived from metastatic site: vertebral metastasis VCaP 91 2 415 46 0 29 1092 TMEM141,KIAA1984,MIR4292,C9ORF172,LCN10,LOC100128593,PHPT1,LOC100131193,LCN8,LCN6,C9ORF86,LCN15
SE_02_077200179 chr9:136787945-136801156 Sample_02_0772 Prostate 22Rv1_delSite1_Clone11/12-F6 179 4 407 46 0 27 1092 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_052400355 chr9:136787955-136803071 Sample_02_0524 Pancreas iPS derived pancreatic precursor cells_Lane2 355 6 468 49 0 37 1229 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10,CCDC183-AS1
SE_02_074400197 chr9:136787975-136790809 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 197 1 77 12 0 0 0 LOC100128593,LCN6,CCDC183,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,LCN10,CCDC183-AS1
SE_01_000200087 chr9:136787980-136803377 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 87 3 479 49 0 37 1229 TMEM141,KIAA1984,MIR4292,C9ORF172,LCN10,LOC100128593,PHPT1,LOC100131193,LCN8,MAMDC4,LCN6,C9ORF86,LCN15
SE_01_009900763 chr9:136788019-136803198 Sample_01_0099 Colon transverse colon 763 9 464 49 0 37 1229 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10,CCDC183-AS1
SE_02_109300629 chr9:136788150-136804957 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 629 8 555 52 0 40 1513 TMEM141,CCDC183,CCDC183-AS1,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10
SE_02_067300499 chr9:136788151-136805188 Sample_02_0673 Prostate LNCAP_FA 499 6 560 52 0 40 1568 TMEM141,CCDC183,CCDC183-AS1,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10
SE_02_146400457 chr9:136788173-136807632 Sample_02_1464 Ovary CAOV4 457 4 644 60 0 51 2071 TMEM141,CCDC183-AS1,CCDC183,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10
SE_02_108600447 chr9:136788225-136804426 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 447 6 525 51 0 37 1382 TMEM141,CCDC183,CCDC183-AS1,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10
SE_02_055800508 chr9:136788694-136801128 Sample_02_0558 iPSCs FX52 iPSCs mock 508 4 386 43 0 27 1092 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_109200583 chr9:136788730-136804954 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 583 8 537 49 0 40 1513 TMEM141,CCDC183,CCDC183-AS1,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10
SE_02_109000526 chr9:136788800-136803109 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 526 5 440 45 0 37 1229 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,C9ORF172,LCN15,LCN8,MIR6722,PHPT1,MIR4292,MAMDC4,LCN10,CCDC183-AS1
SE_02_023700531 chr9:136791104-136797580 Sample_02_0237 Colon V389 531 1 219 24 0 21 644 TMEM141,KIAA1984,MIR4292,C9ORF172,LCN10,LOC100128593,LOC100131193,LCN8,LCN6,C9ORF86,LCN15
SE_02_075300139 chr9:136791220-136800205 Sample_02_0753 Embryo ES-derived progenitors_FG type 139 1 296 31 0 26 927 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_075600538 chr9:136791255-136800186 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 538 1 294 31 0 25 908 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_074500109 chr9:136791294-136801226 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 109 1 309 31 0 27 1034 TMEM141,CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,MIR6722,PHPT1,MIR4292,C9ORF172,LCN10,CCDC183-AS1
SE_02_074400264 chr9:136794424-136799775 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 264 1 168 19 0 3 290 CCDC183,LOC100128593,LCN6,RABL6,LCN15,LCN8,TMEM141,MIR6722,MIR4292,C9ORF172,PHPT1,CCDC183-AS1
SE_02_085200548 chr9:136797425-136807931 Sample_02_0852 Mammary gland MCF7L-P 548 1 358 26 0 36 1491 CCDC183,RABL6,CCDC183-AS1,LCN6,C9ORF172,LCN15,LCN8,TMEM141,MIR4292,MAMDC4,PHPT1
SE_02_115900546 chr9:136797425-136807931 Sample_02_1159 Mammary gland MCF7 546 1 358 26 0 36 1491 CCDC183,RABL6,CCDC183-AS1,LCN6,C9ORF172,LCN15,LCN8,TMEM141,MIR4292,MAMDC4,PHPT1
SE_02_056600149 chr9:136798328-136809903 Sample_02_0566 Mammary gland MCF7L-P_E2_24h 149 5 375 27 0 56 1785 CCDC183,RABL6,CCDC183-AS1,LCN6,C9ORF172,LCN15,LCN8,TMEM141,MIR4292,MAMDC4,PHPT1
SE_02_081000358 chr9:136798421-136803275 Sample_02_0810 Mammary gland T47D noSerum 358 4 136 12 0 16 585 CCDC183,LCN6,CCDC183-AS1,RABL6,C9ORF172,LCN15,LCN8,TMEM141,MIR4292,MAMDC4,PHPT1
SE_02_024600376 chr9:136798437-136809922 Sample_02_0246 Mammary gland MCF-7_estradiol 376 2 376 27 0 56 1785 C9ORF86,KIAA1984,LOC100131193,TMEM141,MIR4292,C9ORF172,LCN6,PHPT1,LCN8,MAMDC4,LCN15
Genomic distribution of SEs associated with LCN6
Genome Browser

The strength of the tissue affected by the gene

Expression of LCN6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)