SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000232455
Gene: LARS2-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr3:45483974-45509545 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_155100160 chr3:45511837-45554141 Sample_02_1551 Gastrointestinal Stromal MaMel 160 11 1139 116 0 64 733 LARS2,LARS2-AS1,LIMD1
SE_02_155300032 chr3:45511877-45680555 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 32 68 4616 613 53 217 2108 LARS2,LIMD1,LIMD1-AS1,SACM1L,LARS2-AS1
SE_02_133000278 chr3:45514674-45570185 Sample_02_1330 Blood AMU-AML1 278 21 1488 185 1 64 646 LARS2,LARS2-AS1,LIMD1
SE_02_130400423 chr3:45514693-45578487 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 423 23 1738 224 2 64 646 LARS2,LARS2-AS1,LIMD1
SE_02_145900214 chr3:45516209-45568416 Sample_02_1459 Pancreas THP1+PANC1_shCTCF 214 10 1405 178 1 56 616 LARS2,LARS2-AS1,LIMD1
SE_02_139100255 chr3:45522332-45671214 Sample_02_1391 Peripheral blood FE-PD_ALK- 255 33 4077 566 52 139 1059 LARS2,LIMD1,SACM1L,LIMD1-AS1,LARS2-AS1
SE_02_149301069 chr3:45523813-45551714 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 1069 9 727 78 0 35 456 LARS2,LARS2-AS1,LIMD1
SE_02_155400027 chr3:45525160-45677795 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 27 42 4165 570 53 176 1415 LARS2,LIMD1,SACM1L,LIMD1-AS1,LARS2-AS1
SE_02_092200738 chr3:45525721-45583678 Sample_02_0922 Heart fetal heart_PCW10_12434 738 12 1554 209 4 40 398 LARS2,LARS2-AS1,LIMD1
SE_02_092300176 chr3:45525793-45632146 Sample_02_0923 Heart fetal heart_PCW10_12522 176 22 2857 359 31 107 792 LARS2,LIMD1,LARS2-AS1
SE_02_145800313 chr3:45528155-45570321 Sample_02_1458 Pancreas THP1+PANC1_shNC 313 17 1133 150 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_134000819 chr3:45533376-45568409 Sample_02_1340 Blood acute myeloid leukemia 819 15 961 127 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_084100569 chr3:45533466-45571632 Sample_02_0841 Blood THP-1_untr 569 17 1059 142 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_067300399 chr3:45534004-45548868 Sample_02_0673 Prostate LNCAP_FA 399 5 389 39 0 28 382 LARS2,LARS2-AS1,LIMD1
SE_02_085800122 chr3:45534035-45613705 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 122 12 2170 286 21 103 792 LARS2,LIMD1,LARS2-AS1
SE_02_059400569 chr3:45534153-45618583 Sample_02_0594 iPSC-derived neural progenitors 569 19 2288 297 23 103 792 LARS2,LIMD1,LARS2-AS1
SE_02_155700522 chr3:45534166-45561340 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 522 6 742 92 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_129700504 chr3:45534189-45552866 Sample_02_1297 Lung lung 504 8 491 53 0 32 398 LARS2,LARS2-AS1,LIMD1
SE_02_076400585 chr3:45534274-45549355 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 585 6 393 39 0 28 398 LARS2,LARS2-AS1,LIMD1
SE_02_054800439 chr3:45534389-45571467 Sample_02_0548 Blood THP-1_24h with EtOH 439 13 1029 142 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_129600502 chr3:45534654-45549707 Sample_02_1296 Perigastric lymph node Perigastric lymph node 502 7 391 40 0 28 398 LARS2,LARS2-AS1,LIMD1
SE_02_091800942 chr3:45534693-45561341 Sample_02_0918 Heart left ventricle_DCM_LV1437 942 11 731 91 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_089800292 chr3:45534842-45618250 Sample_02_0898 Heart left ventricle_LV1356 292 21 2267 295 23 103 792 LARS2,LIMD1,LARS2-AS1
SE_02_084000376 chr3:45534931-45561445 Sample_02_0840 Embryo hNPCs_R1159Q/+ 376 8 731 92 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_131300085 chr3:45534974-45569732 Sample_02_1313 Brain hMGLs_CD33_SNP 85 19 947 129 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_092500120 chr3:45534977-45643103 Sample_02_0925 Heart fetal heart_PCW17_12570 120 34 2907 388 38 121 875 LARS2,LIMD1,SACM1L,LIMD1-AS1,LARS2-AS1
SE_02_088900270 chr3:45534981-45629146 Sample_02_0889 Heart left ventricle_LV1183 270 22 2534 319 27 107 792 LARS2,LIMD1,LARS2-AS1
SE_02_089600302 chr3:45535800-45618331 Sample_02_0896 Heart left ventricle_LV1294 302 31 2243 293 23 103 792 LARS2,LIMD1,LARS2-AS1
SE_02_131800037 chr3:45535847-45571478 Sample_02_1318 Brain hMGLs_SORL1-A528T 37 17 994 138 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_089200218 chr3:45535959-45618108 Sample_02_0892 Heart left ventricle_LV1215 218 22 2234 293 23 103 792 LARS2,LIMD1,LARS2-AS1
SE_02_092400228 chr3:45536105-45611737 Sample_02_0924 Heart fetal heart_PCW10_12569 228 18 2074 274 20 102 792 LARS2,LIMD1,LARS2-AS1
SE_02_092100380 chr3:45536179-45610781 Sample_02_0921 Heart embryonic heart_CS22 380 19 2048 270 17 96 792 LARS2,LIMD1,LARS2-AS1
SE_02_146001201 chr3:45536196-45567204 Sample_02_1460 Blood Mutz-3 1201 12 855 115 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_131600120 chr3:45536197-45571255 Sample_02_1316 Brain hMGLs_TREM2-R47H 120 21 987 136 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_085700799 chr3:45536267-45568243 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 799 7 880 119 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_01_009800373 chr3:45536342-45617933 Sample_01_0098 Heart left ventricle_51y 373 21 2222 291 23 103 792 LARS2,LIMD1,LARS2-AS1
SE_02_061301135 chr3:45536358-45560986 Sample_02_0613 Liposarcoma MLPS_T1 1135 17 683 84 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_079500225 chr3:45536360-45554432 Sample_02_0795 Brain 1953 225 12 487 51 0 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_131500064 chr3:45536447-45572186 Sample_02_1315 Brain hMGLs_INPP5D SNP 64 16 1003 138 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_088801117 chr3:45536467-45561373 Sample_02_0888 Heart left ventricle_LV1160 1117 13 694 87 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_090000857 chr3:45536492-45561961 Sample_02_0900 Heart left ventricle_LV1452 857 13 716 90 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_091201185 chr3:45536508-45561814 Sample_02_0912 Heart left ventricle_DCM_LV1300 1185 11 715 89 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_131400047 chr3:45536680-45572977 Sample_02_1314 Brain hMGLs_TREM2-KO 47 18 1020 141 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_089700802 chr3:45537171-45583642 Sample_02_0897 Heart left ventricle_LV1325 802 13 1260 171 4 39 398 LARS2,LARS2-AS1,LIMD1
SE_02_131200059 chr3:45537207-45571244 Sample_02_1312 Brain hMGLs_WT 59 16 958 128 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_131700062 chr3:45537300-45569440 Sample_02_1317 Brain hMGLs_SORL1-KO 62 18 884 117 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_090601324 chr3:45537310-45561631 Sample_02_0906 Heart left ventricle_DCM_LV1072 1324 7 683 81 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_092000629 chr3:45537496-45567160 Sample_02_0920 Heart left ventricle_DCM_LV1535 629 9 820 106 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_118500784 chr3:45537504-45569361 Sample_02_1185 Brain GBM14 784 8 879 116 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_079800286 chr3:45537506-45554625 Sample_02_0798 Brain 1919 286 8 461 44 0 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_091501251 chr3:45537522-45561391 Sample_02_0915 Heart left ventricle_DCM_LV1371 1251 9 665 78 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_090201113 chr3:45537530-45561530 Sample_02_0902 Heart left ventricle_LV1558 1113 14 671 80 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_091400487 chr3:45537531-45562075 Sample_02_0914 Heart left ventricle_DCM_LV1342 487 13 686 82 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_117401098 chr3:45537531-45567435 Sample_02_1174 Brain GBM02 1098 17 827 108 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_112500422 chr3:45537549-45560950 Sample_02_1125 Adipose visceral adipose_CS_VC06 422 5 649 75 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_119701035 chr3:45537550-45567394 Sample_02_1197 Brain GBM33 1035 10 825 108 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_00_005200227 chr3:45537554-45618236 Sample_00_0052 Heart left ventricle 3y 227 27 2200 282 23 103 792 LARS2,LIMD1,LARS2-AS1
SE_02_089000910 chr3:45537568-45561285 Sample_02_0890 Heart left ventricle_LV1200 910 12 656 77 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_119600972 chr3:45537581-45567862 Sample_02_1196 Brain GBM32 972 12 834 110 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_00_004600964 chr3:45537592-45561155 Sample_00_0046 Heart right ventricle_34y 964 16 654 75 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_112900751 chr3:45537597-45562038 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 751 16 686 82 1 36 398 LARS2,LARS2-AS1,LIMD1
SE_02_089300932 chr3:45537616-45583857 Sample_02_0893 Heart left ventricle_LV1226 932 12 1252 170 4 40 398 LARS2,LARS2-AS1,LIMD1
SE_02_104600668 chr3:45537645-45677234 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 668 33 3833 527 53 172 1352 LARS2,LIMD1,SACM1L,LIMD1-AS1,LARS2-AS1
SE_02_108000746 chr3:45537648-45560967 Sample_02_1080 Muscle JR1 shCtrl 746 10 649 74 1 34 398 LARS2,LARS2-AS1,LIMD1
SE_02_091600949 chr3:45537661-45561603 Sample_02_0916 Heart left ventricle_DCM_LV1392 949 10 677 79 1 34 398 LARS2,LARS2-AS1,LIMD1
SE_02_090400546 chr3:45537680-45616427 Sample_02_0904 Heart left ventricle_DCM_LV1028 546 16 2152 278 22 101 792 LARS2,LIMD1,LARS2-AS1
SE_02_120400989 chr3:45537689-45568152 Sample_02_1204 Brain NB2 989 9 838 109 1 34 398 LARS2,LARS2-AS1,LIMD1
SE_02_119800966 chr3:45537725-45567804 Sample_02_1198 Brain GBM34 966 13 827 109 1 34 398 LARS2,LARS2-AS1,LIMD1
SE_02_091901023 chr3:45537881-45561599 Sample_02_0919 Heart left ventricle_DCM_LV1532 1023 14 665 79 1 33 398 LARS2,LARS2-AS1,LIMD1
SE_02_074000178 chr3:45537998-45634662 Sample_02_0740 Muscle RH3 178 24 2598 328 31 104 792 LARS2,LIMD1,LARS2-AS1
SE_02_120300873 chr3:45538016-45567881 Sample_02_1203 Brain NB1 873 9 812 108 1 33 398 LARS2,LARS2-AS1,LIMD1
SE_02_100900409 chr3:45538571-45567219 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 409 10 789 104 1 18 398 LARS2,LARS2-AS1,LIMD1
SE_02_138600286 chr3:45541419-45576228 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 286 16 978 137 1 17 398 LARS2,LARS2-AS1,LIMD1
SE_02_158401394 chr3:45544024-45554576 Sample_02_1584 Brain U87 GBM_Mock 1394 4 283 30 0 12 302 LARS2,LARS2-AS1,LIMD1
SE_02_061100177 chr3:45544273-45616467 Sample_02_0611 Liposarcoma DDLPS_T1 177 38 1976 265 22 79 696 LARS2,LIMD1,LARS2-AS1
SE_02_122700829 chr3:45550306-45556719 Sample_02_1227 Bone marrow U266 829 1 193 21 1 6 0 LARS2-AS1,LIMD1
SE_02_122300824 chr3:45551460-45571218 Sample_02_1223 Bone marrow KMS28BM 824 6 584 94 1 6 0 LARS2-AS1,LIMD1
Genomic distribution of SEs associated with LARS2-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of LARS2-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)