SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000251075
Gene: HTT-AS Gene type: lncRNA
Strand: - External links:
Genomic region: chr4:3049094-3074538 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077500805 chr4:3009019-3048136 Sample_02_0775 Pancreas EndoC-BH1_SE 805 16 1238 133 12 47 650 GRK4,NOP14,HTT,HTT-AS
SE_02_104602845 chr4:3021041-3042234 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2845 7 680 80 11 20 495 GRK4,HTT,HTT-AS
SE_02_093100469 chr4:3035811-3047950 Sample_02_0931 Embryo H9 UTXKO 469 6 384 48 4 6 239 GRK4,HTT,HTT-AS
SE_02_103900365 chr4:3036239-3048091 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 365 6 381 48 4 6 239 GRK4,HTT,HTT-AS
SE_02_078200815 chr4:3037744-3059778 Sample_02_0782 Blood MEC1 815 6 651 80 3 5 165 GRK4,HTT,HTT-AS
SE_02_078300940 chr4:3037763-3059813 Sample_02_0783 Blood MEC2 940 5 651 80 3 5 165 GRK4,HTT,HTT-AS
SE_02_097100918 chr4:3037825-3059057 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 918 6 631 78 3 5 165 GRK4,HTT,HTT-AS
SE_02_070100061 chr4:3077029-3145165 Sample_02_0701 Bone David_TC32 61 21 1894 141 8 118 1011 HTT,HTT-AS
SE_02_143200428 chr4:3085167-3150001 Sample_02_1432 Bone A673 STAG2 WT 428 27 1769 135 9 124 1167 HTT,HTT-AS
SE_02_143300706 chr4:3086311-3150457 Sample_02_1433 Bone A673 STAG2 null 706 31 1759 136 10 123 1167 HTT,HTT-AS
SE_02_066300274 chr4:3092747-3141236 Sample_02_0663 Thyroid TT 274 12 1316 100 6 106 934 HTT,HTT-AS
SE_02_146500241 chr4:3101675-3137727 Sample_02_1465 Ovary CAOV4cis 241 7 999 77 6 98 840 HTT,HTT-AS
SE_02_156901416 chr4:3106102-3124633 Sample_02_1569 Endothelial Endothelial cells 1416 4 481 38 3 34 268 HTT,HTT-AS
SE_02_128000177 chr4:3106469-3137263 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 177 4 816 64 6 87 762 HTT,HTT-AS
SE_02_046601186 chr4:3106519-3139476 Sample_02_0466 Adipose visceral adipocytes 1186 24 880 72 6 87 762 HTT,HTT-AS
SE_02_147400359 chr4:3106645-3135978 Sample_02_1474 Bone CHLA-10 359 11 774 61 6 87 734 HTT,HTT-AS
SE_02_147600435 chr4:3106814-3137000 Sample_02_1476 Bone EW-1 435 9 800 64 6 87 762 HTT,HTT-AS
SE_02_106100348 chr4:3106823-3136762 Sample_02_1061 Bone TC71_WT 348 7 793 63 6 87 762 HTT,HTT-AS
SE_02_148800346 chr4:3106823-3136762 Sample_02_1488 Bone TC-71 346 7 793 63 6 87 762 HTT,HTT-AS
SE_02_105800619 chr4:3106866-3126913 Sample_02_1058 Bone A673_SA2 Rescue 619 9 518 40 3 47 313 HTT,HTT-AS
SE_02_105900217 chr4:3106866-3139768 Sample_02_1059 Bone A673_WT 217 11 879 74 6 87 762 HTT,HTT-AS
SE_02_147300219 chr4:3106866-3139768 Sample_02_1473 Bone A-673 219 11 879 74 6 87 762 HTT,HTT-AS
SE_02_094900974 chr4:3106900-3135458 Sample_02_0949 Umbilical artery HUAEC_WT 974 15 752 59 6 83 704 HTT,HTT-AS
SE_02_156400209 chr4:3106923-3135577 Sample_02_1564 Gastrointestinal Stromal GIST-430 209 8 757 60 6 84 704 HTT,HTT-AS
SE_01_010500681 chr4:3106924-3136235 Sample_01_0105 Thyroid gland thyroid gland_54y 681 11 777 61 6 87 743 HTT,HTT-AS
SE_02_047401568 chr4:3106985-3124913 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1568 9 461 39 3 34 268 HTT,HTT-AS
SE_02_146400445 chr4:3107045-3137293 Sample_02_1464 Ovary CAOV4 445 6 803 65 6 87 762 HTT,HTT-AS
SE_02_148000879 chr4:3107048-3139990 Sample_02_1480 Bone MHH-ES-1 879 10 882 75 6 87 762 HTT,HTT-AS
SE_02_095001309 chr4:3107088-3135876 Sample_02_0950 Umbilical vein HUVEC_WT 1309 13 763 60 6 84 723 HTT,HTT-AS
SE_02_147900236 chr4:3107746-3136547 Sample_02_1479 Bone EW-7 236 8 765 60 5 80 700 HTT,HTT-AS
SE_02_106000631 chr4:3108284-3135682 Sample_02_1060 Bone TC71_SA2 KO 631 4 726 58 5 77 642 HTT,HTT-AS
SE_02_148300334 chr4:3111813-3135216 Sample_02_1483 Bone RD-ES 334 6 619 44 4 76 642 HTT,HTT-AS
SE_02_148700140 chr4:3116912-3125924 Sample_02_1487 Bone TC-32 140 6 218 11 0 28 129 HTT,HTT-AS
SE_02_148600640 chr4:3118260-3125791 Sample_02_1486 Bone SK-N-MC 640 6 186 10 0 28 128 HTT,HTT-AS
Genomic distribution of SEs associated with HTT-AS
Genome Browser

The strength of the tissue affected by the gene

Expression of HTT-AS

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)