Gene overview
| Strategies/Algorithm: | proximal | Ensembl ID: | ENSG00000134240 |
| Gene: | HMGCS2 | Gene type: | protein_coding |
| Strand: | - | External links: |
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| Genomic region: | chr1:119748002-119768905 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_004000727 | chr1:119711576-119747747 |
Sample_02_0040 | Embryo | PFG | 727 | 6 | 1030 | 77 | 9 | 117 | 1493 | PHGDH,HMGCS2 |
| SE_02_117300632 | chr1:119711749-119744245 |
Sample_02_1173 | Brain | GBM01 | 632 | 13 | 930 | 64 | 8 | 116 | 1451 | PHGDH,HMGCS2 |
| SE_01_010100900 | chr1:119711793-119744011 |
Sample_01_0101 | Pancreas | pancreas_54y | 900 | 12 | 920 | 62 | 7 | 115 | 1409 | PHGDH,HMGCS2 |
| SE_02_121300510 | chr1:119711839-119744377 |
Sample_02_1213 | Brain | GBM31 | 510 | 10 | 932 | 65 | 8 | 116 | 1461 | PHGDH,HMGCS2 |
| SE_02_052500645 | chr1:119711871-119737758 |
Sample_02_0525 | Pancreas | iPS derived pancreatic precursor cells_Lane1 | 645 | 7 | 737 | 50 | 6 | 81 | 1000 | PHGDH,HMGCS2 |
| SE_02_125500240 | chr1:119711880-119725641 |
Sample_02_1255 | Bladder | Bladder tumor Luminal2 | 240 | 8 | 382 | 27 | 5 | 42 | 566 | PHGDH,HMGCS2 |
| SE_02_143201470 | chr1:119711881-119747591 |
Sample_02_1432 | Bone | A673 STAG2 WT | 1470 | 15 | 1016 | 77 | 9 | 113 | 1459 | PHGDH,HMGCS2 |
| SE_02_052400689 | chr1:119711932-119738268 |
Sample_02_0524 | Pancreas | iPS derived pancreatic precursor cells_Lane2 | 689 | 7 | 742 | 49 | 6 | 79 | 992 | PHGDH,HMGCS2 |
| SE_02_049401338 | chr1:119711940-119722853 |
Sample_02_0494 | Islets | differentiated hESCs Late pancreatic progenitor cells | 1338 | 6 | 282 | 19 | 5 | 31 | 336 | PHGDH,HMGCS2 |
| SE_02_120301013 | chr1:119729294-119744321 |
Sample_02_1203 | Brain | NB1 | 1013 | 5 | 437 | 32 | 3 | 64 | 762 | PHGDH,HMGCS2 |
| SE_02_101300597 | chr1:119731794-119744191 |
Sample_02_1013 | Brain | Lateral temporal lobe_6T_AD | 597 | 10 | 362 | 25 | 1 | 64 | 734 | PHGDH,HMGCS2 |
| SE_02_003900678 | chr1:119770852-119797097 |
Sample_02_0039 | Embryo | AFG | 678 | 6 | 740 | 110 | 1 | 15 | 122 | REG4,HMGCS2,NBPF7 |
| SE_02_025700664 | chr1:119771323-119792422 |
Sample_02_0257 | Endometrioid | endometrioid_adenocarcinoma_TumorA | 664 | 4 | 575 | 82 | 1 | 5 | 0 | HMGCS2,REG4 |
| SE_02_077800227 | chr1:119772801-119791403 |
Sample_02_0778 | Mammary gland | MCF7_FASR | 227 | 5 | 495 | 63 | 1 | 4 | 0 | HMGCS2,REG4 |
| SE_02_124800457 | chr1:119773014-119791341 |
Sample_02_1248 | Bladder | RT4 | 457 | 7 | 490 | 63 | 1 | 4 | 0 | HMGCS2,REG4 |
| SE_02_074100816 | chr1:119814101-119839559 |
Sample_02_0741 | Muscle | RH30 | 816 | 7 | 722 | 32 | 1 | 34 | 243 | NBPF7,HMGCS2,REG4 |
Genomic distribution of SEs associated with HMGCS2