SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000240288
Gene: GHRLOS Gene type: lncRNA
Strand: + External links:
Genomic region: chr3:10285754-10294903 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_131500083 chr3:10145100-10245899 Sample_02_1315 Brain hMGLs_INPP5D SNP 83 28 3230 337 9 91 1860 VHL,IRAK2,BRK1,GHRL,FANCD2OS,GHRLOS,TATDN2,LINC00852
SE_02_152900827 chr3:10149119-10262087 Sample_02_1529 Peripheral blood neutrophils_0BC75 827 27 3570 364 11 125 2266 VHL,TATDN2,IRAK2,BRK1,GHRL,FANCD2OS,GHRLOS,LINC00852,LOC401052,SEC13,FANCD2
SE_02_076200120 chr3:10164429-10273774 Sample_02_0762 Podocyte podocyte_CTL 120 20 3461 360 9 135 1958 TATDN2,IRAK2,BRK1,SEC13,VHL,GHRL,GHRLOS,LINC00852
SE_02_143700147 chr3:10166663-10264420 Sample_02_1437 Liver LSEC-TNF 147 19 3088 320 9 112 1634 TATDN2,IRAK2,LINC00852,GHRL,GHRLOS,VHL
SE_01_009600160 chr3:10166666-10232684 Sample_01_0096 B-cell lymphoma DOHH2 160 15 2168 212 4 50 727 IRAK2,TATDN2,VHL,GHRLOS
SE_02_082600066 chr3:10166860-10232089 Sample_02_0826 Stomach gastric tumor 66 48 2144 211 4 50 727 IRAK2,TATDN2,VHL,GHRLOS
SE_02_145800039 chr3:10167004-10250978 Sample_02_1458 Pancreas THP1+PANC1_shNC 39 22 2666 280 8 106 1518 TATDN2,IRAK2,LINC00852,GHRL,GHRLOS,VHL
SE_02_122400157 chr3:10167772-10232272 Sample_02_1224 Bone marrow normal plasma cell 157 30 2100 210 4 50 727 IRAK2,TATDN2,VHL,GHRLOS
SE_02_151000257 chr3:10168225-10241548 Sample_02_1510 Lung H3122_LR_Pano 257 22 2342 249 7 65 962 IRAK2,TATDN2,VHL,GHRLOS,LINC00852
SE_02_050200130 chr3:10168667-10250538 Sample_02_0502 Blood HL-60_PMA_16h 130 24 2584 273 7 105 1518 TATDN2,IRAK2,LINC00852,GHRL,GHRLOS,VHL
SE_02_145900023 chr3:10169370-10250626 Sample_02_1459 Pancreas THP1+PANC1_shCTCF 23 20 2576 273 7 105 1518 TATDN2,IRAK2,LINC00852,GHRL,GHRLOS,VHL
SE_02_085500031 chr3:10169884-10250953 Sample_02_0855 Glioblastoma Glioblastoma neurosphere cell_HF-2927 31 12 2563 273 7 106 1518 TATDN2,IRAK2,LINC00852,GHRL,GHRLOS,VHL
SE_02_078400134 chr3:10170151-10242464 Sample_02_0784 Blood OSU-CLL 134 22 2304 249 7 68 1013 IRAK2,TATDN2,VHL,GHRLOS,LINC00852
SE_02_010300027 chr3:10170178-10245182 Sample_02_0103 Peripheral blood Macrophages_GM-CSF_72h_TNF-a_PGE2_Pam3CSK4 27 12 2373 253 7 73 1165 IRAK2,TATDN2,GHRL,C3ORF42,VHL,GHRLOS
SE_02_058600114 chr3:10170624-10243592 Sample_02_0586 Chordal patient-derived chordoma MGH_4 114 22 2321 246 6 72 1141 IRAK2,LINC00852,GHRL,GHRLOS,TATDN2,VHL
SE_02_119500535 chr3:10171135-10243415 Sample_02_1195 Brain GBM29 535 21 2290 243 6 72 1126 IRAK2,LINC00852,GHRL,GHRLOS,TATDN2,VHL
SE_02_117400181 chr3:10171455-10243586 Sample_02_1174 Brain GBM02 181 22 2281 243 6 71 1141 IRAK2,LINC00852,GHRL,GHRLOS,TATDN2,VHL
SE_02_157300170 chr3:10171911-10255747 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 170 27 2638 283 7 104 1518 TATDN2,IRAK2,LINC00852,GHRL,GHRLOS,VHL
SE_02_133000170 chr3:10171918-10245946 Sample_02_1330 Blood AMU-AML1 170 25 2337 252 6 70 1165 IRAK2,LINC00852,GHRL,GHRLOS,TATDN2,VHL
SE_02_131600130 chr3:10172006-10245118 Sample_02_1316 Brain hMGLs_TREM2-R47H 130 28 2302 245 6 70 1165 IRAK2,LINC00852,GHRL,GHRLOS,TATDN2,VHL
SE_02_103500940 chr3:10172270-10234811 Sample_02_1035 Mammary gland HCC70_Vehicle 940 37 1997 209 3 52 822 IRAK2,TATDN2,VHL,GHRLOS,LINC00852
SE_02_131400114 chr3:10172312-10246154 Sample_02_1314 Brain hMGLs_TREM2-KO 114 33 2329 250 6 70 1165 IRAK2,LINC00852,GHRL,GHRLOS,TATDN2,VHL
SE_02_131300101 chr3:10172719-10251107 Sample_02_1313 Brain hMGLs_CD33_SNP 101 30 2457 265 7 104 1518 TATDN2,IRAK2,LINC00852,GHRL,GHRLOS,VHL
SE_02_077000722 chr3:10172940-10250801 Sample_02_0770 Ovary OVCA429_shLuc 722 28 2444 263 6 103 1518 TATDN2,IRAK2,LINC00852,GHRL,GHRLOS,VHL,SEC13,EMC3,BRK1
SE_02_084100606 chr3:10173298-10241438 Sample_02_0841 Blood THP-1_untr 606 18 2169 236 6 62 962 IRAK2,TATDN2,VHL,GHRLOS,LINC00852
SE_02_155300289 chr3:10173571-10270874 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 289 24 3036 324 8 117 1778 TATDN2,IRAK2,LINC00852,GHRL,GHRLOS,VHL
SE_02_045500083 chr3:10186246-10264847 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 83 24 2414 267 8 91 1532 TATDN2,IRAK2,LINC00852,GHRL,GHRLOS,VHL
SE_02_134500198 chr3:10186408-10232941 Sample_02_1345 Leukophereses leukophereses_p358 198 25 1487 158 3 29 625 IRAK2,TATDN2,VHL,GHRLOS
SE_02_134000500 chr3:10186540-10250996 Sample_02_1340 Blood acute myeloid leukemia 500 24 2001 225 7 85 1416 TATDN2,IRAK2,LINC00852,GHRL,GHRLOS,VHL
SE_02_131200190 chr3:10187620-10245697 Sample_02_1312 Brain hMGLs_WT 190 20 1805 204 6 52 1063 IRAK2,LINC00852,GHRL,GHRLOS,TATDN2,VHL
SE_02_092901227 chr3:10188061-10232663 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1227 29 1435 154 3 29 625 IRAK2,TATDN2,VHL,GHRLOS
SE_02_147100294 chr3:10188488-10232195 Sample_02_1471 Blood Outgrowth Endothelia BOEC 294 6 1412 153 3 29 625 IRAK2,TATDN2,VHL,GHRLOS
SE_02_011200104 chr3:10188764-10243371 Sample_02_0112 Connective tissue HT1080_untreated 104 8 1700 195 6 51 1023 IRAK2,TATDN2,GHRL,C3ORF42,VHL,GHRLOS
SE_02_134900245 chr3:10188884-10242465 Sample_02_1349 Leukophereses leukophereses_p411 245 12 1669 194 6 47 911 IRAK2,TATDN2,VHL,GHRLOS,LINC00852
SE_02_131700331 chr3:10210877-10244161 Sample_02_1317 Brain hMGLs_SORL1-KO 331 15 1011 127 5 37 881 IRAK2,TATDN2,LINC00852,GHRLOS,GHRL
SE_02_131800342 chr3:10210907-10245079 Sample_02_1318 Brain hMGLs_SORL1-A528T 342 12 1041 129 5 37 881 IRAK2,TATDN2,LINC00852,GHRLOS,GHRL
SE_02_045400289 chr3:10217769-10273421 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 289 17 1668 193 6 87 1321 TATDN2,IRAK2,SEC13,LINC00852,GHRL,GHRLOS
SE_02_045600362 chr3:10219803-10265370 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 362 17 1340 150 6 70 1091 TATDN2,IRAK2,LINC00852,GHRLOS,GHRL
SE_02_104200336 chr3:10220091-10264015 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 336 8 1301 146 6 70 1058 TATDN2,IRAK2,LINC00852,GHRLOS,GHRL
SE_02_045700564 chr3:10220889-10251283 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 564 11 887 101 5 65 942 TATDN2,IRAK2,LINC00852,GHRLOS,GHRL
SE_02_083300996 chr3:10223358-10251570 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 996 10 788 97 5 62 855 TATDN2,IRAK2,LINC00852,GHRLOS,GHRL
SE_02_010400869 chr3:10223510-10274915 Sample_02_0104 Blood neutrophils 869 10 1488 174 6 83 1142 TATDN2,IRAK2,GHRL,SEC13,C3ORF42,GHRLOS
SE_02_111201088 chr3:10223534-10269492 Sample_02_1112 T lymphocyte THP-6 T-ALL 1088 13 1316 149 6 67 971 TATDN2,IRAK2,LINC00852,GHRLOS,GHRL
SE_02_135000592 chr3:10227519-10250818 Sample_02_1350 Leukophereses leukophereses_p456 592 9 667 84 4 56 791 TATDN2,IRAK2,LINC00852,GHRLOS,GHRL
SE_02_023300744 chr3:10241755-10275111 Sample_02_0233 Tonsil Th1 744 8 993 109 2 63 843 TATDN2,IRAK2,GHRL,SEC13,C3ORF42,GHRLOS
SE_02_122000706 chr3:10282261-10286971 Sample_02_1220 Bone marrow JJN3 706 2 153 15 0 11 423 GHRLOS,GHRL,LINC00852,SEC13,MIR378B,TATDN2
SE_02_028600435 chr3:10288701-10300671 Sample_02_0286 Liver HuH7_IL-1alpha_1h 435 2 383 45 3 8 647 GHRL,GHRLOS,TATDN2,SEC13,C3ORF42
SE_02_004900618 chr3:10289927-10294519 Sample_02_0049 Embryo endodermal CyT49_GTtoH 618 1 155 19 2 7 574 GHRL,GHRLOS,TATDN2,SEC13,C3ORF42
SE_02_021100637 chr3:10333147-10370966 Sample_02_0211 Lung MRC-5_NFD_1DPT 637 8 1182 84 7 169 1234 ATP2B2,GHRL,MIR885,SEC13,C3ORF42,GHRLOS
Genomic distribution of SEs associated with GHRLOS
Genome Browser

The strength of the tissue affected by the gene

Expression of GHRLOS

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)