SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID:
Gene: FAM54B Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_008700047 chr1:25615596-25772565 Sample_01_0087 Thyroid gland thyroid-gland 47 21 4084 337 7 391 1138 MAN1C1,FAM54B,SEPN1
SE_02_037100014 chr1:25666111-25772725 Sample_02_0371 Skeletal muscle RH5 14 13 2813 225 7 215 689 MAN1C1,FAM54B,SEPN1
SE_02_004700084 chr1:25693910-25798400 Sample_02_0047 Pancreatic endoderm IIDP/donor790 84 12 2810 227 7 228 1215 MAN1C1,FAM54B,SEPN1,LOC646471
SE_00_000700524 chr1:25729914-25800136 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 524 9 1987 186 5 142 1251 MAN1C1,FAM54B,SEPN1,LOC646471
SE_02_025700152 chr1:25735461-25781506 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 152 6 1294 120 3 111 882 MAN1C1,FAM54B,SEPN1,LOC646471
SE_02_001900351 chr1:25743846-25794703 Sample_02_0019 Embryo Neural crest cells 351 19 1426 132 4 117 1215 MAN1C1,FAM54B,SEPN1,LOC646471
SE_02_002600352 chr1:25744002-25778584 Sample_02_0026 Blood CD4donorE 352 9 943 87 3 85 756 MAN1C1,FAM54B,SEPN1,LOC646471
SE_02_012700331 chr1:25754081-25822255 Sample_02_0127 Blood Induced-regulatory-T-cells_CPI-703 331 10 1975 189 5 192 3261 FAM54B,MAN1C1,SEPN1,LOC646471,PAQR7,C1ORF135
SE_02_006500827 chr1:25765298-25781524 Sample_02_0065 Embryo KO2-Late_G1 827 2 443 34 0 47 360 MAN1C1,FAM54B,SEPN1,LOC646471
SE_02_036800570 chr1:25766138-25822194 Sample_02_0368 Skeletal muscle NS134 570 8 1643 147 3 166 3055 FAM54B,MAN1C1,SEPN1,LOC646471,PAQR7,C1ORF135
SE_02_035700114 chr1:25768410-25798246 Sample_02_0357 Colon Colo320 114 8 864 75 1 66 693 MAN1C1,FAM54B,SEPN1,LOC646471
SE_02_033000468 chr1:25770073-25781643 Sample_02_0330 Endoderm MHG 468 3 318 22 0 47 360 MAN1C1,FAM54B,SEPN1,LOC646471
SE_02_039601128 chr1:25796209-25822202 Sample_02_0396 Skin NHEK-D 1128 7 788 77 2 100 2363 FAM54B,SEPN1,LOC646471,PAQR7,C1ORF135
SE_00_000300347 chr1:25818779-25836259 Sample_00_0003 Adrenal gland adrenal-gland_97d 347 2 479 51 1 67 1498 C1ORF135,FAM54B,LOC646471,PAQR7,SEPN1
SE_02_033600477 chr1:25827862-25876226 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 477 6 1244 133 3 78 1332 C1ORF135,FAM54B,PAQR7,STMN1,MIR3917,LOC646471,SEPN1
SE_02_003900136 chr1:25838895-25928565 Sample_02_0039 Embryo AFG 136 20 2187 204 3 196 1859 MIR3917,STMN1,C1ORF135,PAQR7,FAM54B,LOC646471,SEPN1
SE_02_034200617 chr1:25848646-25876437 Sample_02_0342 Liver HSPCs_F0 617 5 693 66 1 43 769 C1ORF135,PAQR7,STMN1,MIR3917,FAM54B,LOC646471,SEPN1
SE_00_003100089 chr1:25858209-25924043 Sample_00_0031 Placenta placenta 89 8 1626 134 1 175 1859 MIR3917,STMN1,C1ORF135,PAQR7,FAM54B,LOC646471,AL020996.1,EXTL1,TFR1L,SEPN1
SE_02_004800450 chr1:25858881-25907054 Sample_02_0048 Embryo endodermal CyT49_HE 450 11 1192 95 0 140 1856 MIR3917,STMN1,C1ORF135,PAQR7,FAM54B,LOC646471
SE_00_002000934 chr1:25859130-25906341 Sample_00_0020 Large intestine large-intestine_108d 934 8 1174 95 0 114 1646 STMN1,C1ORF135,PAQR7,MIR3917,FAM54B,LOC646471
SE_00_003600762 chr1:25859211-25907145 Sample_00_0036 Small intestine small-intestine_108days 762 11 1188 95 0 140 1829 MIR3917,STMN1,C1ORF135,PAQR7,FAM54B,LOC646471
SE_00_001100825 chr1:25859215-25906460 Sample_00_0011 Esophagus esophagus 825 6 1176 95 0 121 1658 MIR3917,STMN1,C1ORF135,PAQR7,FAM54B,LOC646471,AL020996.1,TFR1L
SE_00_004100781 chr1:25859386-25893025 Sample_00_0041 Stomach stomach_3y 781 7 855 72 0 47 1079 STMN1,PAQR7,C1ORF135,MIR3917,FAM54B,LOC646471
SE_02_035200559 chr1:25861257-25895328 Sample_02_0352 Colon HCT116 559 4 871 77 0 46 1035 STMN1,PAQR7,C1ORF135,MIR3917,FAM54B,LOC646471
SE_02_039600917 chr1:25862394-25896726 Sample_02_0396 Skin NHEK-D 917 6 872 73 0 46 832 STMN1,PAQR7,C1ORF135,MIR3917,FAM54B,LOC646471
SE_01_003700769 chr1:25866928-25894001 Sample_01_0037 Liver hepatocyte 769 4 677 63 0 14 522 STMN1,PAQR7,C1ORF135,MIR3917,FAM54B,LOC646471
Genomic distribution of SEs associated with FAM54B
Genome Browser

The strength of the tissue affected by the gene

Expression of FAM54B

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)