SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000244509
Gene: APOBEC3C Gene type: protein_coding
Strand: + External links:
Genomic region: chr22:39014257-39020352 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_023700667 chr22:38920499-38994344 Sample_02_0237 Colon V389 667 18 2256 187 6 11 1450 APOBEC3A,APOBEC3B,APOBEC3F,CBX6,APOBEC3C,APOBEC3D
SE_01_005200078 chr22:38926719-38988924 Sample_01_0052 Blood neutrophil 78 7 1895 151 3 11 992 APOBEC3A,APOBEC3B,APOBEC3C,APOBEC3D
SE_02_001600273 chr22:38936026-38993848 Sample_02_0016 Blood erythroblasts 273 8 1818 155 3 11 1450 APOBEC3A,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F
SE_00_000600166 chr22:38940545-38994617 Sample_00_0006 Blood CD14-positive-monocyte 166 9 1708 145 2 11 1450 APOBEC3A,APOBEC3B,APOBEC3C,APOBEC3D,APOBEC3F
SE_01_002400221 chr22:38940599-38972908 Sample_01_0024 Blood CD14-positive-monocyte 221 6 999 72 1 0 584 APOBEC3A,APOBEC3B,APOBEC3C,APOBEC3D
SE_02_010400213 chr22:38940768-38969714 Sample_02_0104 Blood neutrophils 213 5 916 67 1 0 584 APOBEC3A,APOBEC3B,APOBEC3C
SE_02_153000248 chr22:38948991-38972683 Sample_02_1530 Peripheral blood neutrophils_0BA0X 248 1 717 43 1 0 584 APOBEC3A,APOBEC3A_B,APOBEC3B-AS1,APOBEC3D,APOBEC3B,APOBEC3C,CBX6
SE_02_021600653 chr22:38950721-38976035 Sample_02_0216 Skin NHEK_scramble 653 4 753 41 1 0 584 APOBEC3A,APOBEC3B,APOBEC3C,APOBEC3D
SE_02_152900875 chr22:38961785-38973715 Sample_02_1529 Peripheral blood neutrophils_0BC75 875 1 372 20 1 0 266 APOBEC3A,APOBEC3A_B,APOBEC3B-AS1,APOBEC3D,APOBEC3B,APOBEC3C,CBX6
SE_02_103602532 chr22:38970161-39006441 Sample_02_1036 Mammary gland HCC70_XY018 2532 6 1176 122 1 11 866 APOBEC3B,APOBEC3B-AS1,APOBEC3A_B,APOBEC3A,APOBEC3C,APOBEC3D,APOBEC3F
SE_02_113600856 chr22:38980628-38987069 Sample_02_1136 Bone U2OS-anaphase/telophase 856 1 217 12 1 11 408 APOBEC3B,APOBEC3A_B,APOBEC3D,APOBEC3A,APOBEC3B-AS1,APOBEC3C
SE_02_075501498 chr22:39036545-39042705 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 1498 1 202 16 0 0 176 APOBEC3F,APOBEC3D,APOBEC3G,APOBEC3C
SE_02_050200275 chr22:39055981-39118815 Sample_02_0502 Blood HL-60_PMA_16h 275 13 2010 274 3 19 1808 APOBEC3H,APOBEC3G,APOBEC3C,CBX7,APOBEC3D,APOBEC3F
SE_02_088500109 chr22:39056019-39078390 Sample_02_0885 Blood NALM6_2 109 5 721 43 0 6 217 APOBEC3G,APOBEC3D,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_017600479 chr22:39059063-39091191 Sample_02_0176 Peripheral blood LOUCY 479 7 1062 102 0 16 1122 APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3H
SE_02_073900129 chr22:39059777-39080725 Sample_02_0739 Blood Nalm6 129 4 687 41 0 6 495 APOBEC3G,APOBEC3D,APOBEC3F,APOBEC3H,APOBEC3C
SE_01_004400244 chr22:39060636-39100013 Sample_01_0044 Haematopoietic and lymphoid tissue Loucy 244 7 1296 152 0 16 1236 APOBEC3H,APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D
SE_02_057300122 chr22:39060793-39083510 Sample_02_0573 Blood Nalm6_1 122 3 752 55 0 16 693 APOBEC3G,APOBEC3D,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_139300578 chr22:39060929-39073881 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 578 7 417 25 0 6 0 APOBEC3D,APOBEC3G,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_073600259 chr22:39060992-39073277 Sample_02_0736 Blood Pt24_leukemia cell_THZ1 259 10 399 24 0 6 0 APOBEC3D,APOBEC3G,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_022200509 chr22:39061073-39098914 Sample_02_0222 Blood DU-528 509 5 1237 139 0 16 1236 APOBEC3H,APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D
SE_02_011800110 chr22:39061172-39079792 Sample_02_0118 Haematopoietic and lymphoid tissue MINO 110 1 614 37 0 6 334 APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3H
SE_00_000500262 chr22:39061282-39100841 Sample_00_0005 Blood B-cell 262 8 1314 164 0 16 1315 APOBEC3H,APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D
SE_01_002000404 chr22:39061286-39115664 Sample_01_0020 Blood B-cell 404 9 1758 255 3 19 1781 APOBEC3H,APOBEC3G,APOBEC3F,APOBEC3C,CBX7,APOBEC3D
SE_00_003900940 chr22:39061300-39098499 Sample_00_0039 Spleen spleen_3y 940 6 1224 138 0 16 1236 APOBEC3H,APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D
SE_02_078400050 chr22:39061360-39122196 Sample_02_0784 Blood OSU-CLL 50 16 1915 274 3 19 1781 APOBEC3H,APOBEC3G,APOBEC3C,CBX7,APOBEC3D,APOBEC3F
SE_02_038700430 chr22:39061417-39090551 Sample_02_0387 Lymph node CD19+_B_cells_nhl_FL1-2 430 12 970 95 0 16 1122 APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3H
SE_02_122200031 chr22:39061442-39118585 Sample_02_1222 Bone marrow KMS12 31 14 1831 265 3 19 1781 APOBEC3H,APOBEC3G,APOBEC3C,CBX7,APOBEC3D,APOBEC3F
SE_02_115700514 chr22:39061470-39073459 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 514 14 392 25 0 6 0 APOBEC3D,APOBEC3G,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_121800681 chr22:39061501-39075327 Sample_02_1218 Bone marrow Daudi 681 8 441 26 0 6 0 APOBEC3D,APOBEC3G,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_012300178 chr22:39062696-39081035 Sample_02_0123 Haematopoietic and lymphoid tissue GRANTA-519 178 2 611 34 0 11 555 APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3H
SE_02_032100314 chr22:39062882-39119172 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 314 6 1800 261 3 19 1781 APOBEC3H,APOBEC3G,APOBEC3F,APOBEC3C,CBX7,APOBEC3D
SE_02_078200888 chr22:39062887-39069078 Sample_02_0782 Blood MEC1 888 1 206 9 0 0 0 APOBEC3D,APOBEC3G,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_032000286 chr22:39062992-39119057 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 286 6 1795 261 3 19 1781 APOBEC3H,APOBEC3G,APOBEC3F,APOBEC3C,CBX7,APOBEC3D
SE_00_005600898 chr22:39063342-39099944 Sample_00_0056 Sigmoid colon sigmoid colon 3y 898 18 1219 144 0 16 1236 APOBEC3H,APOBEC3G,APOBEC3D,APOBEC3F,APOBEC3C
SE_02_122500509 chr22:39063347-39080972 Sample_02_1225 Bone marrow RAJI 509 8 594 33 0 6 544 APOBEC3G,APOBEC3D,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_028300039 chr22:39063385-39080319 Sample_02_0283 Peripheral blood p7-CLL-patient_CD74 39 15 571 33 0 6 431 APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3H
SE_02_012600129 chr22:39063484-39122543 Sample_02_0126 Blood Induced-regulatory-T-cells_DMSO 129 11 1867 269 3 19 1781 APOBEC3H,APOBEC3G,APOBEC3F,APOBEC3C,CBX7,APOBEC3D
SE_02_013200101 chr22:39063484-39122543 Sample_02_0132 Lung 1015_CL 101 11 1867 269 3 19 1781 APOBEC3H,APOBEC3G,APOBEC3F,APOBEC3C,CBX7,APOBEC3D
SE_00_002700118 chr22:39063503-39100964 Sample_00_0027 Blood natural-killer-cell 118 9 1251 160 0 16 1315 APOBEC3H,APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D
SE_02_061200526 chr22:39063597-39101049 Sample_02_0612 Liposarcoma DDLPS_T2 526 12 1249 161 0 16 1315 APOBEC3H,APOBEC3G,APOBEC3D,APOBEC3F,APOBEC3C
SE_02_104300052 chr22:39063622-39150502 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 52 49 2673 348 13 86 3015 APOBEC3H,APOBEC3G,CBX7,APOBEC3C,APOBEC3D,APOBEC3F
SE_01_005900190 chr22:39063628-39070193 Sample_01_0059 Lung PC-9 190 1 221 7 0 0 0 APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3H,APOBEC3G
SE_02_142900257 chr22:39063667-39131674 Sample_02_1429 Blood GM12878_WT 257 18 2133 292 5 24 1981 APOBEC3H,APOBEC3G,CBX7,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3B,CBX6
Genomic distribution of SEs associated with APOBEC3C
Genome Browser

The strength of the tissue affected by the gene

Expression of APOBEC3C

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)