SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000005206
Gene: SPPL2B Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:2328615-2355095 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_133200652 chr19:2315619-2353908 Sample_02_1332 Blood Monomac6_CTRL 652 6 1469 113 3 49 2549 SPPL2B,LSM7,C19ORF35,TMPRSS9,OAZ1,LINGO3
SE_02_120200504 chr19:2315944-2346322 Sample_02_1202 Brain GBM38 504 7 1135 88 2 48 2116 SPPL2B,LSM7,C19ORF35,TMPRSS9,OAZ1,LINGO3
SE_02_117300737 chr19:2316040-2345936 Sample_02_1173 Brain GBM01 737 8 1122 88 2 48 2116 SPPL2B,LSM7,C19ORF35,TMPRSS9,OAZ1,LINGO3
SE_02_103400535 chr19:2316073-2342504 Sample_02_1034 Blood AML cell 535 3 981 78 2 40 1561 SPPL2B,LSM7,C19ORF35,TMPRSS9,OAZ1,LINGO3
SE_02_083500340 chr19:2316076-2342533 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 340 8 981 78 2 40 1561 SPPL2B,LSM7,C19ORF35,TMPRSS9,OAZ1,LINGO3
SE_00_005600999 chr19:2316112-2345939 Sample_00_0056 Sigmoid colon sigmoid colon 3y 999 7 1119 88 2 48 2116 SPPL2B,LSM7,C19ORF35,TMPRSS9,OAZ1,LINGO3
SE_02_138500358 chr19:2317680-2361967 Sample_02_1385 Other iPSCs 358 11 1653 133 3 49 2829 SPPL2B,LSM7,C19ORF35,TMPRSS9,OAZ1,LINGO3
SE_02_111201039 chr19:2318184-2350307 Sample_02_1112 T lymphocyte THP-6 T-ALL 1039 9 1220 92 2 47 2116 SPPL2B,LSM7,C19ORF35,TMPRSS9,OAZ1,LINGO3
SE_02_082601399 chr19:2320347-2343726 Sample_02_0826 Stomach gastric tumor 1399 7 905 70 2 41 1688 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_034400050 chr19:2321562-2354997 Sample_02_0344 Blood CD34 50 6 1332 97 2 48 2752 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_143301540 chr19:2321957-2354428 Sample_02_1433 Bone A673 STAG2 null 1540 16 1288 92 2 46 2530 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_143100182 chr19:2322578-2343893 Sample_02_1431 Blood T cell 182 3 826 62 1 39 1547 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_027500641 chr19:2323903-2340591 Sample_02_0275 Retina FW14 641 4 643 48 1 30 1071 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_048900034 chr19:2323929-2342323 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 34 5 710 55 1 37 1398 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_048400056 chr19:2323935-2343062 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 56 9 732 58 1 37 1406 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_048700058 chr19:2323953-2343611 Sample_02_0487 Bone marrow HSCe_71y_CD34+,CD38-,Lineage- 58 11 754 59 1 39 1519 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_093400305 chr19:2324027-2343084 Sample_02_0934 Embryo H7-WT 305 8 729 58 1 37 1395 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_048600047 chr19:2324063-2343334 Sample_02_0486 Bone marrow HSCe_66y_CD34+,CD38-,Lineage- 47 6 737 59 1 39 1446 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_034500392 chr19:2324081-2342118 Sample_02_0345 Blood AML8 392 5 699 55 1 37 1355 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_097000158 chr19:2324217-2388114 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 158 18 2338 224 4 50 2593 SPPL2B,LSM7,C19ORF35,MIR7108,TMPRSS9,TIMM13,LINGO3
SE_02_048200090 chr19:2324329-2342229 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 90 6 698 55 1 36 1292 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_128300178 chr19:2324419-2334634 Sample_02_1283 Lung NCI-H2107_p8-15 178 3 320 21 1 12 299 SPPL2B,LSM7,C19ORF35,LINGO3
SE_02_048300069 chr19:2324588-2342437 Sample_02_0483 Bone marrow HSCe_22y_CD34+,CD38-,Lineage- 69 7 688 53 1 36 1282 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_093200461 chr19:2324635-2341930 Sample_02_0932 Embryo H9 WT_1 461 8 677 53 1 36 1251 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_048500143 chr19:2324804-2342290 Sample_02_0485 Bone marrow HSCe_65y_CD34+,CD38-,Lineage- 143 9 677 53 1 36 1282 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_048800047 chr19:2324904-2343119 Sample_02_0488 Bone marrow HSCe_74y_CD34+,CD38-,Lineage- 47 7 699 55 1 36 1310 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_104801489 chr19:2325522-2338045 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1489 5 466 29 1 16 513 SPPL2B,LSM7,C19ORF35,LINGO3
SE_02_096200666 chr19:2326223-2334331 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 666 1 236 13 0 12 250 SPPL2B,LSM7,C19ORF35,LINGO3
SE_02_082700720 chr19:2326478-2346211 Sample_02_0827 Stomach normal gastric 720 4 769 56 1 44 1837 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_096000378 chr19:2326600-2338019 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 378 6 436 28 1 16 513 SPPL2B,LSM7,C19ORF35,LINGO3
SE_02_121200339 chr19:2326632-2334405 Sample_02_1212 Brain GBM30 339 1 227 13 0 12 250 SPPL2B,LSM7,C19ORF35,LINGO3
SE_02_042400401 chr19:2326732-2346352 Sample_02_0424 Colon SW620 401 3 767 56 1 44 1837 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_036900360 chr19:2326807-2335070 Sample_02_0369 Skeletal muscle RD 360 1 252 14 1 14 376 SPPL2B,LSM7,LINGO3,C19ORF35
SE_02_037900360 chr19:2326807-2335070 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 360 1 252 14 1 14 376 SPPL2B,LSM7,LINGO3,C19ORF35
SE_02_003200728 chr19:2326916-2346391 Sample_02_0032 Pancreas pancreatic-islets-M 728 4 763 56 1 44 1837 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_035800150 chr19:2327079-2344045 Sample_02_0358 Colon LS180 150 3 669 51 1 39 1465 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_00_002000785 chr19:2327242-2335029 Sample_00_0020 Large intestine large-intestine_108d 785 1 233 12 1 14 376 SPPL2B,LSM7,LINGO3,C19ORF35
SE_02_024100457 chr19:2327246-2342386 Sample_02_0241 Colon V456 457 4 593 44 1 36 1282 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_00_003600627 chr19:2327305-2338043 Sample_00_0036 Small intestine small-intestine_108days 627 2 408 26 1 16 513 SPPL2B,LSM7,LINGO3,C19ORF35
SE_02_047700867 chr19:2327393-2346167 Sample_02_0477 Colon intestinal epithelial organoids_139a 867 4 733 54 1 44 1837 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_02_068600116 chr19:2327877-2337741 Sample_02_0686 Lung NCI-H128_no infection 116 4 374 23 1 16 489 SPPL2B,LSM7,C19ORF35,LINGO3
SE_02_052200246 chr19:2327934-2341779 Sample_02_0522 Colon SW620 246 5 550 42 1 36 1224 SPPL2B,LSM7,LINGO3,C19ORF35,TMPRSS9
SE_00_004900770 chr19:2328676-2333970 Sample_00_0049 Small intestine small intestine 30y 770 3 144 7 0 5 165 SPPL2B,C19ORF35,LINGO3,LSM7
SE_02_108000837 chr19:2328692-2334313 Sample_02_1080 Muscle JR1 shCtrl 837 2 154 7 0 5 162 SPPL2B,C19ORF35,LINGO3,LSM7
SE_02_120301221 chr19:2330051-2345873 Sample_02_1203 Brain NB1 1221 4 643 47 1 32 1679 SPPL2B,LINGO3,C19ORF35,TMPRSS9,LSM7
SE_02_129200111 chr19:2330162-2337952 Sample_02_1292 Lung JHU-LX110-SCLC PDX 111 3 316 19 1 4 347 SPPL2B,C19ORF35,LINGO3,LSM7
SE_02_121000343 chr19:2330209-2346273 Sample_02_1210 Brain GBM17 343 7 651 47 1 32 1666 SPPL2B,LINGO3,C19ORF35,TMPRSS9,LSM7
SE_02_120401031 chr19:2330359-2346323 Sample_02_1204 Brain NB2 1031 3 649 47 1 32 1643 SPPL2B,LINGO3,C19ORF35,TMPRSS9,LSM7
SE_02_138400474 chr19:2331016-2353187 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 474 8 913 63 2 33 1836 SPPL2B,LINGO3,C19ORF35,TMPRSS9,LSM7
SE_02_129500144 chr19:2331064-2333998 Sample_02_1295 Lung JHU-LX48-SCLC PDX 144 5 72 2 0 0 0 SPPL2B,C19ORF35,LINGO3,LSM7
SE_02_104701942 chr19:2331828-2335879 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1942 1 149 9 1 2 126 SPPL2B,C19ORF35,LINGO3,LSM7
Genomic distribution of SEs associated with SPPL2B
Genome Browser

The strength of the tissue affected by the gene

Expression of SPPL2B

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)