SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000146006
Gene: LRRTM2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr5:138868921-138875368 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_101700155 chr5:138815342-138981398 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 155 30 4065 321 3 535 1890 SIL1,CTNNA1,LRRTM2
SE_02_156701219 chr5:138869820-138885644 Sample_02_1567 iPSCs CiPSC 1219 4 344 20 1 169 513 CTNNA1,LRRTM2
SE_02_157001231 chr5:138869925-138885830 Sample_02_1570 iPSCs EiPSC 1231 3 348 20 1 169 506 CTNNA1,LRRTM2
SE_02_098901493 chr5:138871448-138930461 Sample_02_0989 Kidney kidney cortex_WT 1493 28 1358 117 1 279 717 CTNNA1,LRRTM2
SE_02_091000968 chr5:138897702-138955873 Sample_02_0910 Heart left ventricle_DCM_LV1275 968 19 1530 116 1 172 1144 SIL1,CTNNA1,LRRTM2
SE_02_091100943 chr5:138897770-138955998 Sample_02_0911 Heart left ventricle_DCM_LV1290 943 16 1533 116 1 172 1144 SIL1,CTNNA1,LRRTM2
SE_02_089200547 chr5:138899251-138976140 Sample_02_0892 Heart left ventricle_LV1215 547 19 1989 141 1 248 1144 SIL1,CTNNA1,LRRTM2
SE_02_090800662 chr5:138899340-138976298 Sample_02_0908 Heart left ventricle_DCM_LV1262 662 27 1993 142 1 248 1144 SIL1,CTNNA1,LRRTM2
SE_02_089600992 chr5:138899406-138955897 Sample_02_0896 Heart left ventricle_LV1294 992 17 1506 113 1 172 1144 SIL1,CTNNA1,LRRTM2
SE_02_088800913 chr5:138899879-138955605 Sample_02_0888 Heart left ventricle_LV1160 913 13 1491 112 1 170 1144 SIL1,CTNNA1,LRRTM2
SE_02_021100048 chr5:138899958-138974804 Sample_02_0211 Lung MRC-5_NFD_1DPT 48 18 1947 139 1 247 1144 SIL1,CTNNA1,LRRTM2
SE_02_089700919 chr5:138899968-138955903 Sample_02_0897 Heart left ventricle_LV1325 919 13 1501 113 1 172 1144 SIL1,CTNNA1,LRRTM2
SE_01_009800650 chr5:138900031-138976031 Sample_01_0098 Heart left ventricle_51y 650 14 1978 140 1 247 1144 SIL1,CTNNA1,LRRTM2
SE_02_089801298 chr5:138900035-138955914 Sample_02_0898 Heart left ventricle_LV1356 1298 12 1501 113 1 172 1144 SIL1,CTNNA1,LRRTM2
SE_02_088900732 chr5:138900068-138976201 Sample_02_0889 Heart left ventricle_LV1183 732 14 1985 142 1 248 1144 SIL1,CTNNA1,LRRTM2
SE_02_088701039 chr5:138900071-138955923 Sample_02_0887 Heart left ventricle_LV1121 1039 8 1502 113 1 172 1144 SIL1,CTNNA1,LRRTM2
SE_02_091700779 chr5:138900145-138956319 Sample_02_0917 Heart left ventricle_DCM_LV1433 779 12 1512 113 1 172 1144 SIL1,CTNNA1,LRRTM2
SE_02_090001132 chr5:138900180-138955794 Sample_02_0900 Heart left ventricle_LV1452 1132 12 1496 113 1 172 1144 SIL1,CTNNA1,LRRTM2
SE_02_091900934 chr5:138900273-138955862 Sample_02_0919 Heart left ventricle_DCM_LV1532 934 12 1494 113 1 172 1144 SIL1,CTNNA1,LRRTM2
SE_02_089100544 chr5:138900300-138975963 Sample_02_0891 Heart left ventricle_LV1202 544 17 1971 140 1 247 1144 SIL1,CTNNA1,LRRTM2
SE_02_090200687 chr5:138900304-138955709 Sample_02_0902 Heart left ventricle_LV1558 687 14 1488 112 1 172 1144 SIL1,CTNNA1,LRRTM2
SE_02_091300708 chr5:138900371-138976171 Sample_02_0913 Heart left ventricle_DCM_LV1304 708 17 1975 142 1 248 1144 SIL1,CTNNA1,LRRTM2
SE_02_090500593 chr5:138900555-138976099 Sample_02_0905 Heart left ventricle_DCM_LV1033 593 14 1968 141 1 248 1144 SIL1,CTNNA1,LRRTM2
SE_02_089300994 chr5:138900604-138955719 Sample_02_0893 Heart left ventricle_LV1226 994 11 1482 113 1 172 1144 SIL1,CTNNA1,LRRTM2
SE_00_004600519 chr5:138901164-138975670 Sample_00_0046 Heart right ventricle_34y 519 24 1948 138 1 247 1144 SIL1,CTNNA1,LRRTM2
SE_02_090101012 chr5:138901294-138955929 Sample_02_0901 Heart left ventricle_LV1471 1012 20 1474 110 1 172 1144 SIL1,CTNNA1,LRRTM2
SE_02_089000567 chr5:138902963-138975874 Sample_02_0890 Heart left ventricle_LV1200 567 17 1894 134 1 246 1144 SIL1,CTNNA1,LRRTM2
SE_02_121300266 chr5:138918669-138992246 Sample_02_1213 Brain GBM31 266 24 1918 126 2 292 1068 SIL1,CTNNA1,LRRTM2
SE_02_118700363 chr5:138918710-138975755 Sample_02_1187 Brain GBM16 363 17 1519 109 1 216 1068 SIL1,CTNNA1,LRRTM2
SE_02_120500384 chr5:138919442-138992104 Sample_02_1205 Brain NB3 384 34 1896 126 2 261 1068 SIL1,CTNNA1,LRRTM2
SE_02_120300196 chr5:138920264-138991918 Sample_02_1203 Brain NB1 196 28 1873 125 2 258 1068 SIL1,CTNNA1,LRRTM2
SE_02_119400509 chr5:138924479-138985028 Sample_02_1194 Brain GBM28 509 22 1613 104 2 194 1057 SIL1,CTNNA1,LRRTM2
SE_02_110600129 chr5:138924595-138986091 Sample_02_1106 Brain NGP 129 25 1637 106 2 207 1041 SIL1,CTNNA1,LRRTM2
SE_02_143301827 chr5:138924622-138975660 Sample_02_1433 Bone A673 STAG2 null 1827 20 1396 94 1 180 1037 SIL1,CTNNA1,LRRTM2
SE_02_120400169 chr5:138925736-138992340 Sample_02_1204 Brain NB2 169 26 1772 111 2 249 947 SIL1,CTNNA1,LRRTM2
SE_02_117300450 chr5:138925740-138992156 Sample_02_1173 Brain GBM01 450 20 1768 111 2 249 947 SIL1,CTNNA1,LRRTM2
SE_02_110500121 chr5:138925784-138986126 Sample_02_1105 Brain NBL-S 121 27 1613 106 2 200 947 SIL1,CTNNA1,LRRTM2
SE_02_101300122 chr5:138925876-138985100 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 122 25 1585 103 2 185 947 SIL1,CTNNA1,LRRTM2
SE_02_031200188 chr5:138926447-138988133 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 188 5 1648 104 2 225 947 SIL1,CTNNA1,LRRTM2
SE_02_118500046 chr5:138926462-139029347 Sample_02_1185 Brain GBM14 46 30 2456 150 2 345 1047 SIL1,CTNNA1,LRRTM2
SE_02_119800269 chr5:138926473-138981305 Sample_02_1198 Brain GBM34 269 23 1474 95 1 175 947 SIL1,CTNNA1,LRRTM2
SE_02_100600088 chr5:138926546-138955847 Sample_02_1006 Brain Lateral temporal lobe_13T_Old 88 12 877 62 1 99 947 SIL1,CTNNA1,LRRTM2
SE_02_117800298 chr5:138926919-138975756 Sample_02_1178 Brain GBM07 298 11 1339 89 1 174 947 SIL1,CTNNA1,LRRTM2
SE_01_010100898 chr5:138926930-138975651 Sample_01_0101 Pancreas pancreas_54y 898 17 1338 89 1 174 947 SIL1,CTNNA1,LRRTM2
SE_02_096600253 chr5:138927066-138974471 Sample_02_0966 Brain H3.3K27M_JN29-BS3 253 16 1298 86 1 173 947 SIL1,CTNNA1,LRRTM2
SE_02_121200383 chr5:138927102-138975723 Sample_02_1212 Brain GBM30 383 16 1333 87 1 174 947 SIL1,CTNNA1,LRRTM2
SE_02_110800115 chr5:138927150-138986102 Sample_02_1108 Brain SK-N-BE_2_-C 115 15 1571 99 2 200 947 SIL1,CTNNA1,LRRTM2
SE_02_096900227 chr5:138927199-138975348 Sample_02_0969 Brain H3.3K27M_PL637 227 14 1317 86 1 174 947 SIL1,CTNNA1,LRRTM2
SE_02_097900202 chr5:138927240-138981782 Sample_02_0979 Brain JN14-BS1_H3.3K27M 202 18 1459 92 1 181 947 SIL1,CTNNA1,LRRTM2
SE_02_118400278 chr5:138927284-138975624 Sample_02_1184 Brain GBM13 278 21 1323 87 1 174 947 SIL1,CTNNA1,LRRTM2
SE_02_003300481 chr5:138927338-138987152 Sample_02_0033 Pancreas pancreatic-islets-F 481 8 1590 99 2 223 947 SIL1,CTNNA1,LRRTM2
SE_02_021000384 chr5:138927728-138972748 Sample_02_0210 Lung MRC-5_N_1DPT 384 8 1250 81 1 169 947 SIL1,CTNNA1,LRRTM2
SE_02_061100433 chr5:138927817-138975853 Sample_02_0611 Liposarcoma DDLPS_T1 433 11 1319 85 1 173 947 SIL1,CTNNA1,LRRTM2
SE_02_155300787 chr5:138927928-138975594 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 787 13 1309 83 1 173 947 SIL1,CTNNA1,LRRTM2
SE_02_077500844 chr5:138928481-138960834 Sample_02_0775 Pancreas EndoC-BH1_SE 844 11 940 61 1 104 947 SIL1,CTNNA1,LRRTM2
SE_02_078500100 chr5:138928911-138954164 Sample_02_0785 Brain 2097 100 9 769 50 1 88 947 SIL1,CTNNA1,LRRTM2
SE_02_110000106 chr5:138932323-138988031 Sample_02_1100 Brain COG-N-415 106 20 1472 88 2 187 770 SIL1,CTNNA1,LRRTM2
SE_02_155500330 chr5:138932510-138975744 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 330 10 1179 74 1 136 743 SIL1,CTNNA1,LRRTM2
SE_01_002100811 chr5:138937865-138972896 Sample_01_0021 Skin bipolar-neuron 811 5 933 50 1 116 440 SIL1,LRRTM2
SE_02_030800049 chr5:138942330-138971053 Sample_02_0308 Neuroblastoma SJNB1 49 3 778 40 1 114 440 SIL1,LRRTM2
SE_02_025200227 chr5:138942722-138986264 Sample_02_0252 Neuroblastoma IMR5-75-shMYCN-MYCN_high 227 5 1112 56 2 150 440 SIL1,LRRTM2
SE_02_110400170 chr5:138942973-138986167 Sample_02_1104 Brain NB-69 170 5 1106 56 2 150 440 SIL1,LRRTM2
SE_02_098901070 chr5:138943017-138985739 Sample_02_0989 Kidney kidney cortex_WT 1070 11 1095 55 2 147 440 SIL1,LRRTM2
SE_02_123500114 chr5:138943026-138992151 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 114 14 1259 59 2 196 440 SIL1,LRRTM2
SE_02_128600105 chr5:138943176-138972084 Sample_02_1286 Lung NCI-H378_p8-15 105 20 783 38 1 114 440 SIL1,LRRTM2
SE_02_031500077 chr5:138943273-138970728 Sample_02_0315 Neuroblastoma TR14 77 3 750 37 1 114 440 SIL1,LRRTM2
SE_02_096700589 chr5:138943475-138975086 Sample_02_0967 Brain H3.3K27M_JN57 589 15 837 41 1 121 440 SIL1,LRRTM2
SE_02_025300067 chr5:138943531-138986905 Sample_02_0253 Brain BE2C_DMSO 67 5 1116 54 2 170 440 SIL1,LRRTM2
SE_02_004700391 chr5:138943654-138986243 Sample_02_0047 Pancreatic endoderm IIDP/donor790 391 8 1096 54 2 150 440 SIL1,LRRTM2
SE_02_085700588 chr5:138943807-138991766 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 588 6 1228 59 2 196 440 SIL1,LRRTM2
SE_02_119301130 chr5:138943955-138975974 Sample_02_1193 Brain GBM27 1130 14 848 42 1 121 440 SIL1,LRRTM2
SE_02_110900326 chr5:138943968-138986581 Sample_02_1109 Brain SK-N-FI 326 11 1098 54 2 165 440 SIL1,LRRTM2
SE_02_095600680 chr5:138944008-138975717 Sample_02_0956 Brain IDH1_2658 680 13 842 42 1 121 440 SIL1,LRRTM2
SE_02_030400645 chr5:138944013-138957029 Sample_02_0304 Neuroblastoma N206 645 2 404 16 1 47 440 SIL1,LRRTM2
SE_02_118200275 chr5:138944102-138975678 Sample_02_1182 Brain GBM11 275 11 839 42 1 121 440 SIL1,LRRTM2
SE_02_030600434 chr5:138944111-138971557 Sample_02_0306 Autonomic ganglia SH-SY5Y 434 2 746 37 1 114 440 SIL1,LRRTM2
SE_02_030000292 chr5:138944124-138986667 Sample_02_0300 Neuroblastoma CLB-PE 292 5 1096 54 2 165 440 SIL1,LRRTM2
SE_02_068100246 chr5:138944212-138965713 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 246 12 599 29 1 85 440 SIL1,LRRTM2
SE_02_106300447 chr5:138944276-138956165 Sample_02_1063 Brain CLB-GA-control 447 3 371 15 1 46 440 SIL1,LRRTM2
SE_02_003901007 chr5:138944364-138965532 Sample_02_0039 Embryo AFG 1007 4 590 28 1 85 440 SIL1,LRRTM2
SE_02_042100157 chr5:138944441-138986699 Sample_02_0421 Brain BE2C_3 157 4 1088 52 2 168 440 SIL1,LRRTM2
SE_02_119600869 chr5:138944486-138975811 Sample_02_1196 Brain GBM32 869 14 830 39 1 121 440 SIL1,LRRTM2
SE_02_118100660 chr5:138944597-138975220 Sample_02_1181 Brain GBM10 660 9 809 37 1 121 440 SIL1,LRRTM2
SE_02_027600425 chr5:138944664-138965629 Sample_02_0276 Retina FW15 425 3 582 25 1 85 440 SIL1,LRRTM2
SE_02_034100250 chr5:138944817-138987217 Sample_02_0341 Autonomic ganglia SH-SY5Y_untreat 250 4 1077 48 2 170 440 SIL1,LRRTM2
SE_02_106400362 chr5:138944908-138956479 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 362 6 349 9 1 47 440 SIL1,LRRTM2
SE_00_001000501 chr5:138944919-138975018 Sample_00_0010 Embryo endodermal-cell 501 5 788 35 1 121 440 SIL1,LRRTM2
SE_02_100700259 chr5:138945015-138954838 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 259 7 301 6 1 40 440 SIL1,LRRTM2
SE_02_100900178 chr5:138945046-138974674 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 178 10 772 35 1 121 440 SIL1,LRRTM2
SE_02_029600427 chr5:138945228-138972235 Sample_02_0296 Neuroblastoma CLB-BER-Lud 427 2 719 31 1 114 440 SIL1,LRRTM2
SE_02_119200747 chr5:138945243-138981404 Sample_02_1192 Brain GBM26 747 15 913 40 1 122 440 SIL1,LRRTM2
SE_02_031000327 chr5:138945316-138987461 Sample_02_0310 Neuroblastoma SJNB8 327 5 1062 48 2 169 440 SIL1,LRRTM2
SE_02_007800121 chr5:138945370-138956053 Sample_02_0078 Neuroblastoma low-MYCN-Neuroblastoma-patient-cells 121 9 319 8 1 45 440 SIL1,LRRTM2
SE_01_011100630 chr5:138945413-138971913 Sample_01_0111 Brain SK-N-SH 630 10 705 31 1 113 440 SIL1,LRRTM2
SE_02_100000395 chr5:138945664-138955879 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 395 8 302 7 1 45 440 SIL1,LRRTM2
SE_02_118600832 chr5:138945783-138981771 Sample_02_1186 Brain GBM15 832 13 901 39 1 127 440 SIL1,LRRTM2
SE_02_100200044 chr5:138945818-138953321 Sample_02_1002 Brain Lateral temporal lobe_18T_Young 44 2 222 2 1 36 440 SIL1,LRRTM2
SE_02_100400143 chr5:138945826-138954178 Sample_02_1004 Brain Lateral temporal lobe_10T_Old 143 4 249 3 1 37 440 SIL1,LRRTM2
SE_02_052300212 chr5:138945976-138973014 Sample_02_0523 Lung NCIH810 212 12 694 31 1 115 440 SIL1,LRRTM2
SE_02_101100156 chr5:138946420-138965005 Sample_02_1011 Brain Lateral temporal lobe_5T_AD 156 5 493 21 1 77 440 SIL1,LRRTM2
SE_02_128700146 chr5:138946976-138976343 Sample_02_1287 Lung NCI-H510_p8-15 146 26 732 36 1 114 356 SIL1,LRRTM2
SE_02_100500094 chr5:138947290-138975697 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 94 10 709 34 1 103 291 SIL1,LRRTM2
SE_02_027900121 chr5:138948263-138963407 Sample_02_0279 Retina RB 121 7 378 16 1 43 217 SIL1,LRRTM2
SE_02_092300858 chr5:138949868-138976124 Sample_02_0923 Heart fetal heart_PCW10_12522 858 8 649 33 1 102 217 SIL1,LRRTM2
SE_02_092200920 chr5:138950212-138976115 Sample_02_0922 Heart fetal heart_PCW10_12434 920 8 645 33 1 102 217 SIL1,LRRTM2
SE_02_092101172 chr5:138951752-138979943 Sample_02_0921 Heart embryonic heart_CS22 1172 11 683 37 1 90 64 SIL1,LRRTM2
SE_02_129000352 chr5:138951809-138975407 Sample_02_1290 Lung NCI-H69_p8-15 352 10 575 31 1 89 59 SIL1,LRRTM2
SE_02_093700749 chr5:138952228-138975923 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 749 7 577 32 1 84 0 SIL1,LRRTM2
SE_00_000300772 chr5:138952501-138991787 Sample_00_0003 Adrenal gland adrenal-gland_97d 772 5 946 49 2 159 0 SIL1,LRRTM2
SE_02_100100054 chr5:138953096-138972460 Sample_02_1001 Brain Lateral temporal lobe_17T_Young 54 5 477 28 0 78 0 SIL1,LRRTM2
Genomic distribution of SEs associated with LRRTM2
Genome Browser

The strength of the tissue affected by the gene

Expression of LRRTM2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)