SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000239704
Gene: CDRT4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:15436015-15503608 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_001800561 chr17:14917794-14921580 Sample_02_0018 Embryo NEC 561 1 121 2 0 62 0 CDRT7,CDRT4
SE_02_057200434 chr17:15375706-15422415 Sample_02_0572 Brain LN229_1_mM_glucose 434 12 1501 56 2 124 104 TEKT3,CDRT4
SE_02_057100265 chr17:15375843-15422709 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 265 15 1504 59 2 124 104 TEKT3,CDRT4
SE_02_059400058 chr17:15375887-15515177 Sample_02_0594 iPSC-derived neural progenitors 58 33 4211 334 13 289 1186 CDRT4,TVP23C-CDRT4,TVP23C,TEKT3,FAM18B2-CDRT4
SE_02_074100281 chr17:15392166-15415464 Sample_02_0741 Muscle RH30 281 7 790 32 0 70 104 TEKT3,CDRT4
SE_02_094200332 chr17:15397970-15410595 Sample_02_0942 Brain LN229 332 5 442 19 0 29 104 TEKT3,CDRT4
SE_02_018400729 chr17:15398421-15423696 Sample_02_0184 Skin SKMEL30 729 10 811 44 1 46 104 CDRT4
SE_02_155100478 chr17:15405339-15425242 Sample_02_1551 Gastrointestinal Stromal MaMel 478 3 630 44 1 29 104 CDRT4
SE_02_018500893 chr17:15405555-15423688 Sample_02_0185 Skin UACC257 893 5 586 34 1 29 104 CDRT4
SE_02_097700470 chr17:15413980-15470002 Sample_02_0977 Brain 2089_H3.3K27WT 470 13 1625 131 7 104 771 CDRT4,TVP23C-CDRT4
SE_00_002600233 chr17:15429817-15464422 Sample_00_0026 Muscle of trunk muscle-of-trunk 233 5 1014 79 4 84 534 CDRT4
SE_02_037000518 chr17:15429857-15437749 Sample_02_0370 Skeletal muscle RH4 518 1 250 25 1 19 332 CDRT4
SE_01_009700601 chr17:15430090-15509233 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 601 13 2367 240 10 153 898 CDRT4,TVP23C-CDRT4,TVP23C
SE_02_090701223 chr17:15430575-15477149 Sample_02_0907 Heart left ventricle_DCM_LV1223 1223 12 1372 119 5 101 569 CDRT4,TVP23C-CDRT4
SE_02_090600933 chr17:15430620-15476731 Sample_02_0906 Heart left ventricle_DCM_LV1072 933 13 1363 119 5 101 569 CDRT4,TVP23C-CDRT4
SE_02_152700286 chr17:15430698-15470563 Sample_02_1527 Embryo naive embryonic stem cell 286 14 1156 92 5 87 569 CDRT4,TVP23C-CDRT4
SE_02_091000927 chr17:15430708-15477063 Sample_02_0910 Heart left ventricle_DCM_LV1275 927 11 1366 119 5 101 569 CDRT4,TVP23C-CDRT4
SE_02_090901055 chr17:15430714-15476412 Sample_02_0909 Heart left ventricle_DCM_LV1264 1055 10 1348 117 5 101 569 CDRT4,TVP23C-CDRT4
SE_02_090201094 chr17:15430760-15476760 Sample_02_0902 Heart left ventricle_LV1558 1094 14 1356 119 5 101 569 CDRT4,TVP23C-CDRT4
SE_02_088901334 chr17:15430807-15477421 Sample_02_0889 Heart left ventricle_LV1183 1334 11 1367 120 5 101 569 CDRT4,TVP23C-CDRT4
SE_02_090001196 chr17:15430866-15476832 Sample_02_0900 Heart left ventricle_LV1452 1196 14 1352 119 5 101 569 CDRT4,TVP23C-CDRT4
SE_02_089500607 chr17:15430932-15476665 Sample_02_0895 Heart left ventricle_LV1259 607 15 1349 118 5 101 569 CDRT4,TVP23C-CDRT4
SE_02_004800928 chr17:15430950-15435629 Sample_02_0048 Embryo endodermal CyT49_HE 928 1 166 18 1 16 0 CDRT4
SE_02_091501221 chr17:15430950-15476503 Sample_02_0915 Heart left ventricle_DCM_LV1371 1221 12 1341 117 5 101 569 CDRT4,TVP23C-CDRT4
SE_02_004900479 chr17:15431040-15438294 Sample_02_0049 Embryo endodermal CyT49_GTtoH 479 1 228 22 1 19 347 CDRT4
SE_02_089001094 chr17:15431407-15476126 Sample_02_0890 Heart left ventricle_LV1200 1094 13 1310 115 5 92 569 CDRT4,TVP23C-CDRT4
SE_00_002001185 chr17:15431470-15475118 Sample_00_0020 Large intestine large-intestine_108d 1185 5 1275 114 5 84 569 CDRT4
SE_02_046501124 chr17:15432118-15502833 Sample_02_0465 Adipose subcutaneous adipocytes 1124 22 2087 216 10 127 715 CDRT4,TVP23C-CDRT4,TVP23C
SE_02_089601084 chr17:15432723-15476712 Sample_02_0896 Heart left ventricle_LV1294 1084 13 1282 117 4 93 569 CDRT4,TVP23C-CDRT4
SE_02_092001091 chr17:15432839-15475789 Sample_02_0920 Heart left ventricle_DCM_LV1535 1091 9 1245 114 4 84 569 CDRT4,TVP23C-CDRT4
SE_01_008800235 chr17:15435754-15526784 Sample_01_0088 Tibial nerve tibial-nerve 235 12 2629 286 11 148 880 FAM18B2,CDRT4
SE_02_058500415 chr17:15436412-15517271 Sample_02_0585 Umbilical vein HUVEC 0hour 415 18 2349 241 10 146 824 CDRT4,TVP23C-CDRT4,TVP23C
SE_02_144500463 chr17:15436544-15511505 Sample_02_1445 Adipose SW872_TAZ4SA 463 22 2213 227 9 135 805 CDRT4,TVP23C-CDRT4,TVP23C
SE_02_152200385 chr17:15441702-15461818 Sample_02_1522 Skin A375 RTKi 385 5 565 44 3 46 47 CDRT4,TVP23C-CDRT4
SE_02_085800412 chr17:15441804-15464187 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 412 5 631 46 3 54 47 CDRT4,TVP23C-CDRT4
SE_02_061100532 chr17:15451435-15525307 Sample_02_0611 Liposarcoma DDLPS_T1 532 24 2137 241 9 127 452 CDRT4,TVP23C-CDRT4,TVP23C
SE_02_079800063 chr17:15456774-15514306 Sample_02_0798 Brain 1919 63 10 1709 186 6 115 405 CDRT4,TVP23C-CDRT4,TVP23C
SE_02_085400338 chr17:15456783-15514173 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 338 8 1708 186 6 115 405 CDRT4,TVP23C-CDRT4,TVP23C
SE_02_085600525 chr17:15456867-15515527 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 525 8 1739 190 6 114 405 CDRT4,TVP23C-CDRT4,TVP23C
SE_02_052100409 chr17:15456976-15502856 Sample_02_0521 Colon SW480 409 14 1388 152 6 87 243 CDRT4,TVP23C-CDRT4,TVP23C
SE_02_019700074 chr17:15472306-15486111 Sample_02_0197 Stomach SNU1750 74 6 392 45 2 21 0 CDRT4
SE_02_152200314 chr17:15478909-15515918 Sample_02_1522 Skin A375 RTKi 314 6 1086 132 5 60 311 TVP23C-CDRT4,TVP23C,CDRT4
SE_02_095001389 chr17:15478909-15521959 Sample_02_0950 Umbilical vein HUVEC_WT 1389 15 1247 160 7 60 311 TVP23C-CDRT4,TVP23C,CDRT4
SE_02_085800340 chr17:15479043-15515411 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 340 5 1069 129 5 60 311 TVP23C-CDRT4,TVP23C,CDRT4
SE_00_002400997 chr17:15484172-15492709 Sample_00_0024 Embryo mesendoderm 997 2 258 27 2 15 0 CDRT4
SE_02_082200569 chr17:15489473-15503447 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 569 3 450 63 1 37 244 TVP23C-CDRT4,TVP23C,CDRT4
SE_02_082300412 chr17:15489622-15503164 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 412 3 432 61 1 37 207 TVP23C-CDRT4,TVP23C,CDRT4
SE_02_100400251 chr17:15503090-15514184 Sample_02_1004 Brain Lateral temporal lobe_10T_Old 251 3 306 32 0 15 116 TVP23C-CDRT4,TVP23C,CDRT4
Genomic distribution of SEs associated with CDRT4
Genome Browser

The strength of the tissue affected by the gene

Expression of CDRT4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)