Gene overview
| Strategies/Algorithm: | closest_active | Ensembl ID: | ENSG00000101391 |
| Gene: | CDK5RAP1 | Gene type: | protein_coding |
| Strand: | - | External links: |
|
| Genomic region: | chr20:33358839-33401561 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_104901130 | chr20:33344311-33412456 |
Sample_02_1049 | Peripheral blood | CD4+ cell_ROMI | 1130 | 37 | 1702 | 90 | 9 | 110 | 1638 | SNTA1,CDK5RAP1 |
| SE_02_103601570 | chr20:33355215-33410012 |
Sample_02_1036 | Mammary gland | HCC70_XY018 | 1570 | 19 | 1346 | 71 | 5 | 79 | 1441 | SNTA1,CDK5RAP1 |
| SE_02_015000543 | chr20:33358208-33388244 |
Sample_02_0150 | Mammary gland | MDA-MB-231_GATA3 | 543 | 3 | 724 | 41 | 3 | 45 | 802 | CDK5RAP1 |
| SE_02_123100701 | chr20:33358572-33375228 |
Sample_02_1231 | Lung | PC9_siMED13L-1 | 701 | 4 | 413 | 25 | 2 | 28 | 519 | CDK5RAP1 |
| SE_02_123300615 | chr20:33358734-33387768 |
Sample_02_1233 | Lung | PC9_miR-4497 mimic | 615 | 5 | 704 | 39 | 3 | 44 | 777 | CDK5RAP1 |
| SE_02_048101484 | chr20:33367777-33402662 |
Sample_02_0481 | Mammary gland | MDA-MB231 | 1484 | 6 | 833 | 48 | 4 | 51 | 839 | CDK5RAP1,SNTA1 |
| SE_02_147000602 | chr20:33368614-33375478 |
Sample_02_1470 | Umbilical Vein | H441 | 602 | 2 | 162 | 11 | 1 | 13 | 195 | CDK5RAP1 |
| SE_02_076301081 | chr20:33368828-33388163 |
Sample_02_0763 | Podocyte | podocyte_DEX | 1081 | 2 | 455 | 26 | 2 | 29 | 478 | CDK5RAP1 |
| SE_02_051100715 | chr20:33372573-33387894 |
Sample_02_0511 | Prostate | LNCaP95_shARv7_ETOH | 715 | 3 | 352 | 17 | 1 | 27 | 405 | CDK5RAP1 |
| SE_02_143200884 | chr20:33384908-33447259 |
Sample_02_1432 | Bone | A673 STAG2 WT | 884 | 18 | 1549 | 80 | 4 | 188 | 1576 | SNTA1,CDK5RAP1,CBFA2T2 |
| SE_02_143301199 | chr20:33386063-33447162 |
Sample_02_1433 | Bone | A673 STAG2 null | 1199 | 19 | 1520 | 80 | 4 | 187 | 1513 | SNTA1,CDK5RAP1,CBFA2T2 |
| SE_02_019700366 | chr20:33391200-33393726 |
Sample_02_0197 | Stomach | SNU1750 | 366 | 2 | 59 | 3 | 0 | 5 | 59 | CDK5RAP1 |
| SE_02_074600113 | chr20:33392140-33443905 |
Sample_02_0746 | Embryo | ES derived primitive cardiomyocite_day15 | 113 | 24 | 1288 | 66 | 4 | 166 | 1374 | SNTA1,CDK5RAP1,CBFA2T2 |
| SE_01_007600574 | chr20:33393430-33445460 |
Sample_01_0076 | Gastrocnemius medialis | gastrocnemius-medialis | 574 | 3 | 1282 | 66 | 4 | 162 | 1377 | SNTA1,CDK5RAP1,CBFA2T2 |
| SE_02_074400899 | chr20:33407215-33419842 |
Sample_02_0744 | Embryo | ES derived cardiac mesoderm_day5 | 899 | 3 | 329 | 16 | 1 | 50 | 676 | SNTA1,CDK5RAP1 |
| SE_02_074500595 | chr20:33407340-33425043 |
Sample_02_0745 | Embryo | ES derived cardiac progenitor cells_day7 | 595 | 5 | 461 | 24 | 1 | 70 | 676 | SNTA1,CDK5RAP1 |
Genomic distribution of SEs associated with CDK5RAP1