SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000160014
Gene: CALM3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:46601074-46610782 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_061400583 chr19:46592886-46622708 Sample_02_0614 Liposarcoma MLPS_T2 583 14 936 62 3 153 1437 CALM3,PPP5D1,PTGIR,DACT3,DACT3-AS1,GNG8
SE_02_033700560 chr19:46599593-46603785 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 560 1 109 5 0 50 454 CALM3,PTGIR,GNG8
SE_02_108200929 chr19:46599875-46614764 Sample_02_1082 Retina retina 929 5 436 18 0 143 1102 PPP5D1,CALM3,DACT3,DACT3-AS1,PTGIR,GNG8
SE_02_057400538 chr19:46599927-46603488 Sample_02_0574 Blood MOLM-13_sgNeg2 538 1 98 4 0 45 454 PPP5D1,CALM3,PTGIR,GNG8
SE_02_039602118 chr19:46599935-46604407 Sample_02_0396 Skin NHEK-D 2118 1 114 4 0 57 454 CALM3,PTGIR,GNG8
SE_02_003200585 chr19:46599953-46606292 Sample_02_0032 Pancreas pancreatic-islets-M 585 1 167 8 0 62 523 CALM3,PTGIR,GNG8
SE_00_002001284 chr19:46599979-46604788 Sample_00_0020 Large intestine large-intestine_108d 1284 1 119 4 0 57 454 CALM3,PTGIR,GNG8
SE_02_120400805 chr19:46599994-46620911 Sample_02_1204 Brain NB2 805 6 653 48 2 144 1238 CALM3,PPP5D1,PTGIR,DACT3,DACT3-AS1,GNG8
SE_00_003601232 chr19:46600023-46604698 Sample_00_0036 Small intestine small-intestine_108days 1232 1 117 4 0 57 454 CALM3,PTGIR,GNG8
SE_02_083501084 chr19:46600028-46603627 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 1084 1 94 4 0 50 454 PPP5D1,CALM3,PTGIR,GNG8
SE_01_008800995 chr19:46600032-46623263 Sample_01_0088 Tibial nerve tibial-nerve 995 3 735 53 2 153 1437 CALM3,PTGIR,GNG8,DACT3
SE_02_117300678 chr19:46600096-46620920 Sample_02_1173 Brain GBM01 678 8 651 48 2 144 1239 CALM3,PPP5D1,PTGIR,DACT3,DACT3-AS1,GNG8
SE_02_126401376 chr19:46600101-46603996 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1376 1 101 4 0 53 454 PPP5D1,CALM3,PTGIR,GNG8
SE_02_058200574 chr19:46600110-46603261 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 574 1 87 2 0 40 454 PPP5D1,CALM3,PTGIR,GNG8
SE_02_004800529 chr19:46600125-46604547 Sample_02_0048 Embryo endodermal CyT49_HE 529 1 111 4 0 57 454 CALM3,PTGIR,GNG8
SE_02_096200613 chr19:46600133-46621599 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 613 5 673 50 2 151 1378 CALM3,PPP5D1,PTGIR,DACT3,DACT3-AS1,GNG8
SE_02_120301117 chr19:46600156-46608743 Sample_02_1203 Brain NB1 1117 1 240 10 0 92 667 PPP5D1,CALM3,PTGIR,GNG8,DACT3
SE_02_155400922 chr19:46600165-46623077 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 922 8 724 51 2 153 1437 CALM3,PPP5D1,PTGIR,DACT3,DACT3-AS1,GNG8
SE_02_120501274 chr19:46600184-46614796 Sample_02_1205 Brain NB3 1274 5 425 16 0 143 1102 PPP5D1,CALM3,DACT3,DACT3-AS1,PTGIR,GNG8
SE_02_118100509 chr19:46600217-46617017 Sample_02_1181 Brain GBM10 509 2 513 30 1 143 1102 PPP5D1,CALM3,DACT3,DACT3-AS1,PTGIR,GNG8
SE_02_121200678 chr19:46600223-46621645 Sample_02_1212 Brain GBM30 678 4 672 49 2 152 1387 CALM3,PPP5D1,PTGIR,DACT3,DACT3-AS1,GNG8
SE_02_058100543 chr19:46600236-46603378 Sample_02_0581 Blood MOLM13_empty_HG 543 1 84 3 0 41 454 PPP5D1,CALM3,PTGIR,GNG8
SE_02_122301122 chr19:46600258-46604127 Sample_02_1223 Bone marrow KMS28BM 1122 1 97 3 0 53 454 PPP5D1,CALM3,PTGIR,GNG8
SE_02_077501774 chr19:46600271-46623345 Sample_02_0775 Pancreas EndoC-BH1_SE 1774 6 733 54 2 153 1448 CALM3,PPP5D1,PTGIR,DACT3,DACT3-AS1,GNG8
SE_02_098200472 chr19:46600277-46607651 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 472 5 198 9 0 78 523 PPP5D1,CALM3,PTGIR,GNG8,DACT3
SE_02_096900768 chr19:46600277-46617363 Sample_02_0969 Brain H3.3K27M_PL637 768 6 522 33 1 143 1102 PPP5D1,CALM3,DACT3,DACT3-AS1,PTGIR,GNG8
SE_02_059100490 chr19:46600280-46620095 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 490 6 616 44 1 143 1102 PPP5D1,CALM3,DACT3,DACT3-AS1,PTGIR,GNG8
SE_02_138100681 chr19:46600287-46611743 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 681 9 349 12 0 140 1102 PPP5D1,CALM3,DACT3,DACT3-AS1,PTGIR,GNG8
SE_02_138600181 chr19:46600293-46603764 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 181 1 85 3 0 50 454 PPP5D1,CALM3,PTGIR,GNG8
SE_02_139000488 chr19:46600303-46603602 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 488 1 82 3 0 50 454 PPP5D1,CALM3,PTGIR,GNG8
SE_02_068800192 chr19:46600310-46604222 Sample_02_0688 Lung NCI-H211_no infection 192 2 95 3 0 56 454 PPP5D1,CALM3,PTGIR,GNG8
SE_02_096000591 chr19:46600355-46603550 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 591 1 79 3 0 50 454 PPP5D1,CALM3,PTGIR,GNG8
SE_02_075300665 chr19:46600412-46605812 Sample_02_0753 Embryo ES-derived progenitors_FG type 665 2 135 6 0 59 489 PPP5D1,CALM3,PTGIR,GNG8,DACT3
SE_02_104000539 chr19:46601377-46619367 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 539 11 537 39 1 125 946 CALM3,PPP5D1,DACT3,DACT3-AS1,PTGIR,GNG8
SE_02_100900426 chr19:46602811-46621462 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 426 9 601 49 2 115 890 CALM3,PTGIR,PPP5D1,DACT3,DACT3-AS1,GNG8
SE_02_037600321 chr19:46602847-46611179 Sample_02_0376 Skeletal muscle RMS237 321 2 263 12 0 108 648 CALM3,PTGIR,GNG8,DACT3
SE_02_104200531 chr19:46603089-46620260 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 531 8 547 44 1 105 648 CALM3,PPP5D1,DACT3,DACT3-AS1,PTGIR,GNG8
Genomic distribution of SEs associated with CALM3
Genome Browser

The strength of the tissue affected by the gene

Expression of CALM3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)