SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000226017
Gene: PRICKLE2-AS3 Gene type: lncRNA
Strand: + External links:
Genomic region: chr3:64187544-64200965 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_115800019 chr3:64104067-64295578 Sample_02_1158 Mammary gland MCF7_siYTHDC1_E2 19 61 5649 320 33 629 1256 PRICKLE2,PRICKLE2-AS2,PRICKLE2-AS3,PRICKLE2-AS1,LINC00994,PSMD6
SE_01_011500468 chr3:64131908-64164592 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 468 7 975 39 6 147 461 PRICKLE2,PRICKLE2-AS2,PRICKLE2-AS3,LINC00994
SE_02_141000078 chr3:64133535-64239859 Sample_02_1410 Brain GSC6 78 22 3120 208 14 369 1091 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2,LINC00994
SE_02_047400512 chr3:64134426-64192163 Sample_02_0474 Fibroblast umbilical cord Fibroblast 512 10 1714 114 9 202 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2,LINC00994
SE_02_087800424 chr3:64137673-64191737 Sample_02_0878 Ovary SVOG3e cells_noDox_control 424 8 1583 111 9 196 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_072700600 chr3:64138327-64220929 Sample_02_0727 Fetal lung IMR90_Etoposide 600 14 2449 179 13 298 962 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_137800447 chr3:64138379-64191712 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 447 20 1557 109 9 195 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_088601624 chr3:64141218-64201814 Sample_02_0886 Skin foreskin_ p63KLF4 1624 11 1786 124 8 212 962 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_044600319 chr3:64141251-64226219 Sample_02_0446 Bone osteosarcoma tumor P2 319 29 2507 188 11 331 1091 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_049900966 chr3:64141655-64192005 Sample_02_0499 Fetal lung IMR90 IR Senescence 966 22 1476 106 6 185 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_126500277 chr3:64142623-64191247 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 277 7 1421 101 6 180 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_126600335 chr3:64142708-64191419 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 335 10 1427 103 6 180 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_063801116 chr3:64142852-64191193 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 1116 12 1411 101 6 180 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_143800820 chr3:64142922-64222610 Sample_02_1438 Liver LSEC 820 20 2360 176 10 285 962 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_157100686 chr3:64142929-64221825 Sample_02_1571 Fibroblast Fibroblast cells 686 19 2344 176 10 283 962 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_137600505 chr3:64142937-64192107 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 505 15 1446 106 6 181 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_126400535 chr3:64142948-64192025 Sample_02_1264 Bone Im-GCT-4072_G34W KO 535 9 1440 106 6 181 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_060500335 chr3:64142961-64240003 Sample_02_0605 Skin Skin Fibroblast_DMSO 335 29 2826 200 11 348 1091 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_060600735 chr3:64142996-64192024 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 735 14 1439 106 6 181 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_048001226 chr3:64143118-64191992 Sample_02_0480 Gingival epithelial HGEP 1226 13 1432 106 6 181 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_138000247 chr3:64143172-64192224 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 247 18 1447 107 6 181 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_156600752 chr3:64143255-64192356 Sample_02_1566 Dermal Dermal fibroblast 752 12 1451 107 6 181 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_137700500 chr3:64143278-64192038 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 500 14 1435 106 6 181 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_158401222 chr3:64143430-64192799 Sample_02_1584 Brain U87 GBM_Mock 1222 10 1457 109 6 182 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_077700027 chr3:64143464-64190186 Sample_02_0777 Mammary gland MCF7_TAMR 27 12 1363 97 6 178 525 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2,PSMD6
SE_02_158300330 chr3:64143550-64191874 Sample_02_1583 Fetal lung IMR90_empty_GM 330 19 1419 104 6 181 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_145201079 chr3:64144109-64191854 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 1079 8 1407 104 6 180 557 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_147200844 chr3:64148980-64164482 Sample_02_1472 Fetal lung IMR-90 844 2 473 28 3 76 247 PRICKLE2,PRICKLE2-AS2,PRICKLE2-AS3
SE_02_052700114 chr3:64149157-64162217 Sample_02_0527 Mammary gland MCF7_WT 114 7 397 19 1 65 195 PRICKLE2,PRICKLE2-AS2,PRICKLE2-AS3,PSMD6
SE_02_052600227 chr3:64149402-64162402 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 227 6 394 21 1 67 195 PRICKLE2,PRICKLE2-AS2,PRICKLE2-AS3,PSMD6
SE_02_056700203 chr3:64150174-64158338 Sample_02_0567 Mammary gland MCF7L-P_TAMR 203 3 245 7 0 39 136 PRICKLE2,PRICKLE2-AS2,PRICKLE2-AS3
SE_02_135500477 chr3:64150330-64191768 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 477 6 1238 103 5 135 343 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_077800293 chr3:64150421-64162330 Sample_02_0778 Mammary gland MCF7_FASR 293 3 369 19 0 61 195 PRICKLE2,PRICKLE2-AS2,PRICKLE2-AS3,PSMD6
SE_02_126301375 chr3:64150568-64191935 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1375 5 1235 103 5 136 343 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_01_011300083 chr3:64151272-64162525 Sample_01_0113 Mammary gland MCF-7 83 5 340 22 0 50 195 PRICKLE2,PRICKLE2-AS2,PRICKLE2-AS3
SE_02_135601020 chr3:64151292-64191708 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 1020 7 1198 103 5 124 343 PRICKLE2,PRICKLE2-AS3,PRICKLE2-AS2
SE_02_103502206 chr3:64157546-64221467 Sample_02_1035 Mammary gland HCC70_Vehicle 2206 14 1922 169 9 201 612 PRICKLE2,PRICKLE2-AS3
SE_02_088100800 chr3:64157608-64191988 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 800 5 1023 99 5 99 207 PRICKLE2,PRICKLE2-AS3
SE_02_088300593 chr3:64157862-64191898 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 593 5 1013 97 5 99 207 PRICKLE2,PRICKLE2-AS3
SE_02_087900336 chr3:64157879-64222556 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 336 12 1938 169 9 203 612 PRICKLE2,PRICKLE2-AS3
SE_02_048100405 chr3:64160971-64193064 Sample_02_0481 Mammary gland MDA-MB231 405 9 957 90 5 86 148 PRICKLE2,PRICKLE2-AS3
SE_02_076301180 chr3:64161732-64201953 Sample_02_0763 Podocyte podocyte_DEX 1180 7 1189 103 6 103 553 PRICKLE2,PRICKLE2-AS3
SE_02_126701506 chr3:64161848-64191815 Sample_02_1267 Bone Im-GCT-4072_G34W 1506 7 879 84 5 78 148 PRICKLE2,PRICKLE2-AS3
SE_02_064801460 chr3:64161986-64191983 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1460 13 881 84 5 77 148 PRICKLE2,PRICKLE2-AS3
SE_02_141900427 chr3:64162544-64191308 Sample_02_1419 Brain hNSC 427 6 840 78 5 74 148 PRICKLE2,PRICKLE2-AS3
SE_02_126100944 chr3:64163081-64191222 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 944 5 825 77 4 71 119 PRICKLE2,PRICKLE2-AS3
SE_02_061000811 chr3:64163108-64200773 Sample_02_0610 Liposarcoma MLS 1765-92 811 6 1121 99 5 92 420 PRICKLE2,PRICKLE2-AS3
SE_02_137900452 chr3:64163142-64191682 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 452 7 841 80 4 70 114 PRICKLE2,PRICKLE2-AS3
SE_02_081100785 chr3:64163183-64192125 Sample_02_0811 Thyroid BCPAP 785 8 860 82 4 70 108 PRICKLE2,PRICKLE2-AS3
SE_02_113701150 chr3:64163188-64191889 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1150 9 847 80 4 70 106 PRICKLE2,PRICKLE2-AS3
SE_02_093800786 chr3:64163217-64191968 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 786 8 847 80 4 70 101 PRICKLE2,PRICKLE2-AS3
SE_02_093600587 chr3:64163321-64191970 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 587 9 846 80 4 70 96 PRICKLE2,PRICKLE2-AS3
SE_02_084600590 chr3:64173260-64192373 Sample_02_0846 Mammary gland MDA-MB-231_untreat 590 5 595 59 2 43 96 PRICKLE2,PRICKLE2-AS3
SE_02_122800878 chr3:64174166-64191789 Sample_02_1228 Mammary gland MDA-MB-231_2 878 7 545 54 2 41 96 PRICKLE2,PRICKLE2-AS3
SE_02_156800175 chr3:64175993-64225433 Sample_02_1568 Heart Cardiac progenitor cells 175 9 1489 129 6 168 602 PRICKLE2,PRICKLE2-AS3
SE_02_153400794 chr3:64176330-64191937 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 794 2 484 47 2 42 96 PRICKLE2,PRICKLE2-AS3
SE_02_133100475 chr3:64180570-64215333 Sample_02_1331 Blood Molm13_CTRL 475 11 1070 89 4 139 501 PRICKLE2,PRICKLE2-AS3
SE_02_083901087 chr3:64183966-64190968 Sample_02_0839 Embryo hNPCs_K755R/+ 1087 4 231 24 1 32 96 PRICKLE2,PRICKLE2-AS3
SE_02_098901739 chr3:64184602-64223615 Sample_02_0989 Kidney kidney cortex_WT 1739 16 1195 105 5 139 501 PRICKLE2,PRICKLE2-AS3
SE_02_088200488 chr3:64184884-64221887 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 488 7 1149 99 5 132 501 PRICKLE2,PRICKLE2-AS3
SE_02_080100551 chr3:64185150-64190059 Sample_02_0801 Brain 2235 551 2 166 18 1 27 63 PRICKLE2,PRICKLE2-AS3
SE_02_079300454 chr3:64185178-64190199 Sample_02_0793 Brain MES20 454 2 170 18 1 27 67 PRICKLE2,PRICKLE2-AS3
SE_02_111500965 chr3:64185386-64191634 Sample_02_1115 Liver HepG2 965 4 214 25 1 29 96 PRICKLE2,PRICKLE2-AS3
SE_02_139000385 chr3:64186648-64218362 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 385 5 983 81 4 125 501 PRICKLE2,PRICKLE2-AS3
Genomic distribution of SEs associated with PRICKLE2-AS3
Genome Browser

The strength of the tissue affected by the gene

Expression of PRICKLE2-AS3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)