Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000015479
Gene: MATR3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:139293674-139331677 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_030101000 chr5:139261760-139311662 Sample_02_0301 Neuroblastoma GIMEN 1000 7 1083 42 3 206 874 MATR3,SNORA74A,SNHG4,PAIP2
SE_01_007600608 chr5:139262187-139313778 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 608 5 1125 46 3 206 1096 MATR3,SNORA74A,SNHG4,PAIP2
SE_02_021300772 chr5:139267590-139306611 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 772 5 853 32 3 100 750 MATR3,SNORA74A,SNHG4,PAIP2
SE_02_042700309 chr5:139270877-139320840 Sample_02_0427 Colon HCT116_shPAF1 309 5 1099 37 3 206 1432 MATR3,SNORA74A,SNHG4,PAIP2
SE_02_017000459 chr5:139270931-139302694 Sample_02_0170 Prostate LNCaP_R1881_DOX 459 5 703 27 3 71 750 MATR3,SNORA74A,SNHG4,PAIP2
SE_02_021200124 chr5:139273314-139300173 Sample_02_0212 Burkitts lymphoma of the left maxilla Raji_DMSO 124 2 589 23 3 52 750 MATR3,SNORA74A,SNHG4,PAIP2
SE_02_029400632 chr5:139273413-139312853 Sample_02_0294 Pancreatic L3-6_DMSO 632 8 853 35 3 149 1012 MATR3,SNORA74A,SNHG4,PAIP2
SE_02_116200584 chr5:139274138-139312398 Sample_02_1162 Stomach YCC11 584 12 830 33 3 143 840 SNHG4,MATR3,SNORA74A,PAIP2
SE_02_076900827 chr5:139275797-139312516 Sample_02_0769 Ovary HEYA8 827 15 801 33 3 140 814 SNHG4,MATR3,SNORA74A,PAIP2
SE_02_003900748 chr5:139281479-139295753 Sample_02_0039 Embryo AFG 748 2 308 14 1 31 357 SNHG4,MATR3,SNORA74A,PAIP2
SE_02_074600358 chr5:139282885-139337391 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 358 14 1276 56 3 239 1362 MATR3,SNHG4,PAIP2,SLC23A1,SNORA74A
SE_02_077500357 chr5:139288559-139300958 Sample_02_0775 Pancreas EndoC-BH1_SE 357 2 276 9 1 26 268 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_032900132 chr5:139291333-139295490 Sample_02_0329 Embryo H9_primed 132 1 99 4 0 25 268 MATR3,SNORA74A,PAIP2
SE_01_003300539 chr5:139292241-139296955 Sample_01_0033 Embryo H9 539 1 110 5 1 26 204 MATR3,SNORA74A,PAIP2
SE_02_055500818 chr5:139292358-139300949 Sample_02_0555 Other HAP1_WT 818 3 200 6 1 26 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_061700912 chr5:139292446-139309526 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 912 5 368 14 1 117 323 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_138200558 chr5:139292578-139296245 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 558 1 86 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_032800395 chr5:139292604-139296321 Sample_02_0328 Embryo H9_naive 395 1 86 2 0 26 203 MATR3,SNORA74A,PAIP2
SE_02_006700315 chr5:139292732-139306572 Sample_02_0067 Embryo AzH-G2/M 315 3 315 10 1 26 203 MATR3,SNORA74A,PAIP2
SE_02_085600370 chr5:139292762-139295974 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 370 1 78 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_00_004300665 chr5:139292771-139296337 Sample_00_0043 Stomach stomach_96d 665 1 84 2 0 26 203 MATR3,SNORA74A,PAIP2
SE_01_005000533 chr5:139292782-139296526 Sample_01_0050 Embryo neural-cell 533 1 88 4 1 26 203 MATR3,SNORA74A,PAIP2
SE_02_101701693 chr5:139292806-139296081 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1693 1 81 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_023401134 chr5:139292820-139316107 Sample_02_0234 Tonsil Th17 1134 7 512 18 1 143 701 MATR3,SNORA74A,PAIP2
SE_00_000900566 chr5:139292828-139311754 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 566 6 420 14 1 123 330 MATR3,SNORA74A,PAIP2
SE_02_068300410 chr5:139292836-139316661 Sample_02_0683 Lung DMS114 410 10 528 18 1 147 741 MATR3,PAIP2,SNORA74A,SNHG4
SE_01_003701119 chr5:139292840-139296419 Sample_01_0037 Liver hepatocyte 1119 1 88 4 1 26 203 MATR3,SNORA74A,PAIP2
SE_00_002600403 chr5:139292896-139296207 Sample_00_0026 Muscle of trunk muscle-of-trunk 403 1 83 2 0 25 203 MATR3,SNORA74A,PAIP2
SE_00_003601268 chr5:139292912-139296205 Sample_00_0036 Small intestine small-intestine_108days 1268 1 82 2 0 25 203 MATR3,SNORA74A,PAIP2
SE_00_003800464 chr5:139292916-139295682 Sample_00_0038 Spinal cord spinal-cord_108d 464 1 72 2 0 25 203 MATR3,SNORA74A,PAIP2
SE_00_002700897 chr5:139292936-139296233 Sample_00_0027 Blood natural-killer-cell 897 1 82 2 0 25 203 MATR3,SNORA74A,PAIP2
SE_00_000500623 chr5:139292945-139296537 Sample_00_0005 Blood B-cell 623 1 86 4 1 26 203 MATR3,SNORA74A,PAIP2
SE_00_002500498 chr5:139292992-139296288 Sample_00_0025 Muscle of leg muscle-of-leg 498 1 82 2 0 26 203 MATR3,SNORA74A,PAIP2
SE_02_143100719 chr5:139292996-139297274 Sample_02_1431 Blood T cell 719 1 104 4 1 26 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_023300615 chr5:139292998-139315550 Sample_02_0233 Tonsil Th1 615 8 493 18 1 137 672 MATR3,SNORA74A,PAIP2
SE_00_000301413 chr5:139293020-139295838 Sample_00_0003 Adrenal gland adrenal-gland_97d 1413 1 73 2 0 25 203 MATR3,SNORA74A,PAIP2
SE_02_081701009 chr5:139293076-139297019 Sample_02_0817 Ovary Epithelial ovarian cancer 1009 2 96 4 1 26 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_158401455 chr5:139293096-139295840 Sample_02_1584 Brain U87 GBM_Mock 1455 1 69 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_083901190 chr5:139293122-139295793 Sample_02_0839 Embryo hNPCs_K755R/+ 1190 1 68 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_064600613 chr5:139293129-139296117 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 613 1 75 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_064500884 chr5:139293141-139296078 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 884 1 74 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_068500221 chr5:139293148-139296089 Sample_02_0685 Lung NCI-H1048_no infection 221 2 74 2 0 25 203 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_093700860 chr5:139293226-139316091 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 860 7 504 18 1 143 700 MATR3,PAIP2,SNORA74A,SNHG4
SE_01_005100417 chr5:139293245-139295973 Sample_01_0051 Embryo neural-progenitor-cell 417 1 68 2 0 25 203 MATR3,SNORA74A,PAIP2
SE_02_065000430 chr5:139293278-139296032 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 430 1 69 2 0 25 201 MATR3,PAIP2,SNORA74A,SNHG4
SE_02_006500416 chr5:139293423-139314083 Sample_02_0065 Embryo KO2-Late_G1 416 3 456 18 1 123 551 MATR3,SNORA74A,PAIP2
SE_02_072100871 chr5:139296290-139315295 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 871 8 410 16 1 110 455 MATR3,PAIP2,SNORA74A,SNHG4

Genomic distribution of SEs associated with MATR3

The strength of the tissue affected by the gene


Expression of MATR3