SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000196505
Gene: GDAP2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:117863485-117929621 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_152200656 chr1:117778322-117806765 Sample_02_1522 Skin A375 RTKi 656 9 821 37 0 59 0 GDAP2
SE_02_049301077 chr1:117778631-117796077 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 1077 6 511 24 0 40 0 GDAP2
SE_02_074000712 chr1:117779662-117806389 Sample_02_0740 Muscle RH3 712 11 772 37 0 58 0 GDAP2
SE_02_083900868 chr1:117781403-117829149 Sample_02_0839 Embryo hNPCs_K755R/+ 868 8 1355 108 0 112 0 GDAP2
SE_02_050000037 chr1:117782337-117865708 Sample_02_0500 Fetal lung IMR90_#2 37 40 2218 133 1 133 148 GDAP2
SE_02_057000902 chr1:117784509-117804188 Sample_02_0570 Brain LN229_10_mM_glucose 902 4 576 29 0 28 0 GDAP2
SE_02_152100579 chr1:117784705-117809759 Sample_02_1521 Skin A375 DMSO 579 6 734 32 0 45 0 GDAP2
SE_02_018400641 chr1:117793460-117810107 Sample_02_0184 Skin SKMEL30 641 4 473 22 0 38 0 GDAP2
SE_02_018300332 chr1:117799769-117827569 Sample_02_0183 Skin SKMEL2 332 4 798 77 0 69 0 GDAP2
SE_02_018000620 chr1:117800156-117828884 Sample_02_0180 melanoma CJM 620 6 811 77 0 82 0 GDAP2
SE_02_018100738 chr1:117800503-117826444 Sample_02_0181 melanoma COLO679 738 7 740 73 0 65 0 GDAP2
SE_02_057200711 chr1:117800826-117839864 Sample_02_0572 Brain LN229_1_mM_glucose 711 11 1067 85 0 91 0 GDAP2
SE_02_154400168 chr1:117801594-117828924 Sample_02_1544 Gastrointestinal Stromal GIST-882 168 7 773 76 0 82 0 GDAP2
SE_02_021000841 chr1:117806136-117828833 Sample_02_0210 Lung MRC-5_N_1DPT 841 6 629 70 0 67 0 GDAP2
SE_02_154800231 chr1:117809565-117841389 Sample_02_1548 Gastrointestinal Stromal GIST-226 231 9 850 77 0 64 0 GDAP2
SE_02_063600085 chr1:117809628-117863727 Sample_02_0636 Skin BJ5ta 85 17 1387 95 1 79 19 GDAP2
SE_02_127100206 chr1:117809684-117844359 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 206 13 930 79 0 61 0 GDAP2
SE_02_044300374 chr1:117809704-117840955 Sample_02_0443 Bone MG63 374 20 838 77 0 61 0 GDAP2
SE_02_044200345 chr1:117810501-117840883 Sample_02_0442 Bone MG63.3 345 19 810 77 0 54 0 GDAP2
SE_00_001500713 chr1:117812563-117829406 Sample_00_0015 Lung IMR-90 713 4 476 66 0 38 0 GDAP2
SE_02_060500922 chr1:117812574-117841083 Sample_02_0605 Skin Skin Fibroblast_DMSO 922 8 760 72 0 47 0 GDAP2
SE_02_060600914 chr1:117812639-117847430 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 914 11 929 75 0 52 0 GDAP2
SE_02_020900350 chr1:117812640-117844247 Sample_02_0209 Lung MRC-5_MRC5_1DPT 350 7 846 73 0 47 0 GDAP2
SE_02_005400188 chr1:117812808-117863696 Sample_02_0054 Lung IMR-90_DMSO_1 188 8 1297 88 1 63 19 GDAP2
SE_02_005500173 chr1:117812849-117863752 Sample_02_0055 Lung IMR-90_Nutlin-3a 173 8 1293 88 1 63 21 GDAP2
SE_02_156600848 chr1:117812932-117840956 Sample_02_1566 Dermal Dermal fibroblast 848 8 742 70 0 46 0 GDAP2
SE_02_072700409 chr1:117813037-117844330 Sample_02_0727 Fetal lung IMR90_Etoposide 409 11 831 72 0 46 0 GDAP2
SE_02_154900677 chr1:117813116-117828377 Sample_02_1549 Gastrointestinal Stromal GIST-430B 677 3 430 61 0 29 0 GDAP2
SE_02_049900440 chr1:117813205-117844333 Sample_02_0499 Fetal lung IMR90 IR Senescence 440 9 827 70 0 46 0 GDAP2
SE_02_139900105 chr1:117813242-117843783 Sample_02_1399 Bone U2OS_siMLL3.1 105 12 816 70 0 46 0 GDAP2
SE_02_126300569 chr1:117814524-117844451 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 569 8 797 64 0 46 0 GDAP2
SE_02_028200253 chr1:117815013-117841322 Sample_02_0282 Lung IMR-90 253 3 699 61 0 46 0 GDAP2
SE_01_002900510 chr1:117815089-117838964 Sample_01_0029 Lung fibroblast-of-lung 510 5 633 61 0 45 0 GDAP2
SE_02_126700737 chr1:117815218-117844142 Sample_02_1267 Bone Im-GCT-4072_G34W 737 10 772 63 0 45 0 GDAP2
SE_02_137600858 chr1:117815503-117840933 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 858 13 676 58 0 45 0 GDAP2
SE_02_139800161 chr1:117818258-117844586 Sample_02_1398 Bone U2OS_siNC 161 11 687 48 0 45 0 GDAP2
SE_02_111300867 chr1:117820280-117840073 Sample_02_1113 Bone U2OS 867 5 498 38 0 45 0 GDAP2
SE_02_111500987 chr1:117820329-117839752 Sample_02_1115 Liver HepG2 987 7 490 38 0 45 0 GDAP2
SE_02_113600468 chr1:117820518-117843901 Sample_02_1136 Bone U2OS-anaphase/telophase 468 8 598 38 0 45 0 GDAP2
SE_02_113400456 chr1:117820817-117838769 Sample_02_1134 Bone U2OS-interphase 456 7 448 34 0 45 0 GDAP2
SE_02_061001199 chr1:117820918-117843883 Sample_02_0610 Liposarcoma MLS 1765-92 1199 5 588 36 0 45 0 GDAP2
SE_02_137501035 chr1:117820932-117841003 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 1035 8 504 34 0 45 0 GDAP2
SE_02_049800577 chr1:117820942-117839616 Sample_02_0498 Fetal lung IMR90 Senescent_1 577 12 467 34 0 45 0 GDAP2
SE_02_127200266 chr1:117820980-117843825 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 266 15 586 36 0 45 0 GDAP2
SE_02_137901280 chr1:117821181-117839566 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 1280 8 455 30 0 45 0 GDAP2
SE_02_050001003 chr1:117880757-117897910 Sample_02_0500 Fetal lung IMR90_#2 1003 13 400 12 0 42 154 GDAP2,WDR3
SE_02_049901184 chr1:117883408-117898617 Sample_02_0499 Fetal lung IMR90 IR Senescence 1184 11 354 9 0 26 122 GDAP2,WDR3
Genomic distribution of SEs associated with GDAP2
Genome Browser

The strength of the tissue affected by the gene

Expression of GDAP2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)